PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024204
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 308aa    MW: 33712.6 Da    PI: 6.2424
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024204genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.76.8e-10117168556
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                  kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l   +   
  Lus10024204 117 KRAKRILANRQSAARSKERKARYIIELERKVQTLQTEATTLSAQLTLFQRDT 168
                  9****************************************99987766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.7E-16113177IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.53115178IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.18E-10117168No hitNo description
Gene3DG3DSA:1.20.5.1705.5E-8117171No hitNo description
PfamPF001701.2E-8117172IPR004827Basic-leucine zipper domain
CDDcd147036.31E-23118167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSFRFPDDMT MMMMDLSPSG PMTPGAGGGD GGSSTCSLEE IGSEDDLFST YIDVDKLTGG  60
VNNSADQSNS TTPSSRPATK HRHSNSVDGS GMFGEIMDAK KAMPPEKLAD LWNVDPKRAK  120
RILANRQSAA RSKERKARYI IELERKVQTL QTEATTLSAQ LTLFQRDTSG LSTENTELKL  180
RLQALEQQAQ LRDALNDALK TEVERLKAAT GEMMSHSESF NLGMHQMPYS SSNFFPLPPQ  240
QSGHTRNMQL PHFSQHMQQT NSHHLSDAMQ SESLARFQGL DISNKGQPNI VKSEGSSICA  300
SESSSTF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00129DAPTransfer from AT1G06850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024204
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007017082.11e-145PREDICTED: transcription factor RF2b
SwissprotQ6S4P49e-97RF2B_ORYSJ; Transcription factor RF2b
TrEMBLA0A1R3IK891e-146A0A1R3IK89_COCAP; Uncharacterized protein
STRINGLus100242040.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15483497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06850.17e-74basic leucine-zipper 52
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]