PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10024044

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

CAMTA

Protein Properties

Length: 960aa MW: 107689 Da PI: 7.7476

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10024044	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	106.8	1.4e-33	25	101	2	77
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvgg 77 l+e ++rwl++ ei++iL +++k++++ e+++rp+sgs++L++rk++ryfrkDG+sw+kkkdgktvrE+he+LK + Lus10024044 25 LQEaQHRWLRPPEICQILSSYKKFRISPEPQNRPPSGSIFLFDRKVTRYFRKDGHSWRKKKDGKTVREAHERLKGSS 101 56669*********************************************************************665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	47.538	21	147	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.8E-35	24	133	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.4E-28	27	100	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	2.33E-11	379	465	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	1.1E-14	559	673	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.57E-11	559	671	No hit	No description
PROSITE profile	PS50297	15.379	560	673	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	5.71E-15	564	674	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.007	612	641	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	9.538	612	644	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.51E-6	775	828	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	15	777	799	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.565	779	807	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.056	780	798	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.49	800	822	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.157	801	825	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0017	805	822	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 960 aa Download sequence Send to blast
MAETSLSPLG NQLAAGWSED IHRLLQEAQH RWLRPPEICQ ILSSYKKFRI SPEPQNRPPS 60 GSIFLFDRKV TRYFRKDGHS WRKKKDGKTV REAHERLKGS SRASFYRVKE TAETISHSQK 120 TDDARLNSEM DTSASSNYHS GTYQMHAQAT NTENLASGAK ASEYEDVESG GVITFCCLMG 180 CLHSVGRCIS IYPFEANSVI GNGLAYESRG QVGSPSWENG LENCNYGTEH IPPDFRVPIK 240 ADNAPTISRQ GDLLGKMFMN SFSKWQESTS HEAIQEQWQR PDAHNSMKSE KESELHSSVK 300 HHLLDGSQRD GLKKLDSFNR WMSNELGDVD ESPVHSTSAT YWQNVKSEDG VDNSNIPLQS 360 DMEPYLMAPS LANDQLFSII DFSPSWVYVG TEVKVLIIGR FLKSQEDLKT YRWSCMFGEV 420 EVAAEVIAEG VLRFYNPLLR AGRIPFYVTC SNRTACSEVC EFEFRDSIVQ DIDDTNSCSS 480 IENIQVRFGK LLCTGPNSSQ NFNQSNASEI SQLSSKIRAL LKKDGDEWDL MLKSTSEEAF 540 SAQKVKDQLL QKLLKEKLHD WLLQKVVEGG KGPSVLDEVG QGVLHLAAAL GYDWALEPTT 600 VAGVRVDFRD LNGWTALHWA ASCGRERTVA SLINLGAAPG ALTDPTPRNP TSITPADLAS 660 TNGHKGIAGF LAEFALTSHF ITLSVDKRNS NGDVSGTNVQ MHSEACVNVD LQGESMKESL 720 AAVRNAAQAA ARLHQVFRVQ SFQRKQVKEN GDGKLRISEE QALSLIKVKG NKKPDEPVEA 780 AAVRIQNKFR SWKGRREFLV IRQQIVKIQA HVKGHQVRKN YRKILWSVGI VEKVILRWRR 840 KRSGLRGFKP ELLTESSSIE LHSSAREDEY DFFKEGRKQT EERSRIALAR VKSMVQYPEA 900 RDQYCRLRNQ IKGSKSVHQL DTGSEATKTE FSDIVELESL SDHDIFMPTA SPSDLMKRH*

Sequence ? help Back to Top

Protein Sequence Length: 960 aa Download sequence Send to blast

MAETSLSPLG NQLAAGWSED IHRLLQEAQH RWLRPPEICQ ILSSYKKFRI SPEPQNRPPS  60
GSIFLFDRKV TRYFRKDGHS WRKKKDGKTV REAHERLKGS SRASFYRVKE TAETISHSQK  120
TDDARLNSEM DTSASSNYHS GTYQMHAQAT NTENLASGAK ASEYEDVESG GVITFCCLMG  180
CLHSVGRCIS IYPFEANSVI GNGLAYESRG QVGSPSWENG LENCNYGTEH IPPDFRVPIK  240
ADNAPTISRQ GDLLGKMFMN SFSKWQESTS HEAIQEQWQR PDAHNSMKSE KESELHSSVK  300
HHLLDGSQRD GLKKLDSFNR WMSNELGDVD ESPVHSTSAT YWQNVKSEDG VDNSNIPLQS  360
DMEPYLMAPS LANDQLFSII DFSPSWVYVG TEVKVLIIGR FLKSQEDLKT YRWSCMFGEV  420
EVAAEVIAEG VLRFYNPLLR AGRIPFYVTC SNRTACSEVC EFEFRDSIVQ DIDDTNSCSS  480
IENIQVRFGK LLCTGPNSSQ NFNQSNASEI SQLSSKIRAL LKKDGDEWDL MLKSTSEEAF  540
SAQKVKDQLL QKLLKEKLHD WLLQKVVEGG KGPSVLDEVG QGVLHLAAAL GYDWALEPTT  600
VAGVRVDFRD LNGWTALHWA ASCGRERTVA SLINLGAAPG ALTDPTPRNP TSITPADLAS  660
TNGHKGIAGF LAEFALTSHF ITLSVDKRNS NGDVSGTNVQ MHSEACVNVD LQGESMKESL  720
AAVRNAAQAA ARLHQVFRVQ SFQRKQVKEN GDGKLRISEE QALSLIKVKG NKKPDEPVEA  780
AAVRIQNKFR SWKGRREFLV IRQQIVKIQA HVKGHQVRKN YRKILWSVGI VEKVILRWRR  840
KRSGLRGFKP ELLTESSSIE LHSSAREDEY DFFKEGRKQT EERSRIALAR VKSMVQYPEA  900
RDQYCRLRNQ IKGSKSVHQL DTGSEATKTE FSDIVELESL SDHDIFMPTA SPSDLMKRH*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10024044

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU830824	0.0	EU830824.1 Linum usitatissimum clone LU0031G03 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021688104.1	0.0	calmodulin-binding transcription activator 3 isoform X1
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	V4S259	0.0	V4S259_9ROSI; Uncharacterized protein
STRING	Lus10024044	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8284	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Link Out ? help Back to Top
Phytozome	Lus10024044

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]