PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10023540 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 282aa MW: 29936.5 Da PI: 9.4286 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0012 | 89 | 111 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+++F++ L H +H Lus10023540 89 YECRTCNRTFPSFQALGGHRASH 111 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 16.2 | 3e-05 | 162 | 184 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F++ L+ H+r+H Lus10023540 162 HECGQCGAEFNSGQALRGHMRRH 184 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.45E-8 | 88 | 111 | No hit | No description |
Pfam | PF13912 | 2.9E-12 | 88 | 113 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.09 | 89 | 111 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.429 | 89 | 116 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 91 | 111 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.45E-8 | 157 | 184 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.5E-4 | 161 | 184 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.6E-11 | 161 | 186 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0044 | 162 | 184 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.408 | 162 | 189 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 164 | 184 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MAKPLPVLPP PVVLTVLLGG STEEEEDMAN CLILLAQGSS SFVTNNHVNA AISSAVNNNN 60 IASGKFTSRK FMETGSGVEG GGKVGYYVYE CRTCNRTFPS FQALGGHRAS HKKPKNLLVT 120 NNTLLATAPS YNEETNFLQL NSGGGLTASN HKGNNSNYNR VHECGQCGAE FNSGQALRGH 180 MRRHRAPPTT IATNLSLLTS NNGGLSSYKN TAANNNKVGG TSGEERLVLG KRGRSLRTTS 240 LDLDLNQLPA PEEKQPITNL PPANNKPTTV FPSQALVGCH Y* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00487 | DAP | Transfer from AT5G04390 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10023540 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10023540 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 3e-33 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10023540 |