PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023165
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family AP2
Protein Properties Length: 550aa    MW: 60076.3 Da    PI: 7.8652
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023165genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.2e-17187236155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Lus10023165 187 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 236
                  78*******************......55************************997 PP
2AP238.62.6e-12279325151
          AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaark 51 
                  s+++GV+ +k  g+W+A+       g    +k+++lg ++t+ eAa+a++ a+ 
  Lus10023165 279 SKFRGVTLHK-CGKWEAR---M---GqllGKKYIYLGLYDTEIEAARAYDMAAI 325
                  79********.7******...5...334336**********99********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.82E-11187246No hitNo description
SuperFamilySSF541713.47E-15187245IPR016177DNA-binding domain
PfamPF008476.6E-9187236IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-16188244IPR001471AP2/ERF domain
SMARTSM003808.2E-31188250IPR001471AP2/ERF domain
PROSITE profilePS5103217.385188244IPR001471AP2/ERF domain
CDDcd000184.03E-24279339No hitNo description
SuperFamilySSF541713.66E-16279338IPR016177DNA-binding domain
PfamPF008473.6E-8279327IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-15280337IPR001471AP2/ERF domain
SMARTSM003809.0E-31280343IPR001471AP2/ERF domain
PROSITE profilePS5103215.33280337IPR001471AP2/ERF domain
PRINTSPR003675.4E-5281292IPR001471AP2/ERF domain
PRINTSPR003675.4E-5319339IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MLVDLNLTMV SSAVNRNSFT SDDNMKRRFD FSPSNNQLDS SGSFNSSSVV NVDPNSNANA  60
VVPGDDDSCS IHNNHGALFG YSFHILTEDQ RASKKKMAVD EDDDKHNHND RTIQLFPVSQ  120
GGVGRGGGVN AVAQCFGASK VWLDLGGREV EYGGLAEKVV AATTQVQQQQ QKPPAKKNRR  180
GPRSKSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGVDAD  240
INYNVSDYDD DIKQMSNFTK EEFVHILRRQ STGFSRGSSK FRGVTLHKCG KWEARMGQLL  300
GKKYIYLGLY DTEIEAARAY DMAAIDCNGR DAVTNFEPSS YDGEIMSEVK PEDQSLDLNL  360
GIAPPDAHEG RRVKSNASSF CIPVGLDKGS RTLNSASGTM NGHNQQSHGL PMETEVCPAR  420
GGINGCHFPV SKVIILVSCC HSIFTIGSMS ELNGSKNCDV NEAGKCNGEE GRRTGPFAKL  480
GMETAKPIRQ REGTAILLLI CSIIRILVGL RQLQLHLASS AVQLLNATHQ IQPSTTIITH  540
QLELTPSSN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023165
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381502.11e-133floral homeotic protein APETALA 2 isoform X1
TrEMBLA0A385JI361e-132A0A385JI36_POPTO; Target of early activation tagged 1
TrEMBLB9MT781e-132B9MT78_POPTR; Uncharacterized protein
STRINGLus100231650.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.23e-84AP2 family protein