PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10022610 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 223aa MW: 23831.9 Da PI: 7.7429 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00065 | 80 | 102 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Lus10022610 80 YQCKTCDRCFNSFQALGGHRASH 102 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 13.6 | 0.0002 | 146 | 168 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Lus10022610 146 HECSICGAGFSSGQALGGHMRRH 168 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.54E-9 | 79 | 102 | No hit | No description |
Pfam | PF13912 | 1.6E-9 | 79 | 103 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 80 | 102 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.138 | 80 | 107 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 82 | 102 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.54E-9 | 141 | 168 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.5E-4 | 144 | 168 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.4E-12 | 145 | 169 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 146 | 168 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.743 | 146 | 168 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 148 | 168 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MADMVTAIDK VVVKGKRTKR QRPLLLTANS NTNIQVSSTA TTSTTSSTSA ESTCTEEEDM 60 ANCLILLAQG TASPAEAFVY QCKTCDRCFN SFQALGGHRA SHKRLRTEED KGNDGGKVVA 120 AVKSVDRKEE LDLSLGIVNS KQSKVHECSI CGAGFSSGQA LGGHMRRHRT VVEPPLPVRS 180 GLELDLNLPA PEDVDGRELN KFRFVFSSSS AAVASALVDC HF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10022610 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007027469.1 | 1e-52 | PREDICTED: zinc finger protein ZAT5 | ||||
Swissprot | Q681X4 | 2e-42 | ZAT5_ARATH; Zinc finger protein ZAT5 | ||||
TrEMBL | A0A061ET06 | 3e-51 | A0A061ET06_THECC; Nucleic acid binding protein, putative | ||||
STRING | Lus10022610 | 1e-163 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 1e-37 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10022610 |
Publications ? help Back to Top | |||
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