PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019873
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 473aa    MW: 53427.2 Da    PI: 5.8166
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019873genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.15.6e-17111200198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f k+l++s+v+   ++ lp +f+++h  +k +++t+ +e+e g ++ +++i +++     l++GWk F+ a++L+egD++vF++++    +++v v+r
  Lus10019873 111 FAKTLVRSNVTVGFWMHLPMRFCKSHL-PK-TDTTVLVENEIGAEYVINYIADRTA----LSGGWKAFCGAHKLNEGDVLVFQMVK--PLRFKVYVVR 200
                  89************************5.33.5679***************555554....***********************766..4444776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-22105202IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-19105202IPR015300DNA-binding pseudobarrel domain
CDDcd100174.52E-22109200No hitNo description
PROSITE profilePS5086312.816111202IPR003340B3 DNA binding domain
PfamPF023627.0E-15111200IPR003340B3 DNA binding domain
SMARTSM010193.2E-17111202IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MDASDEPVSP PAPSPSDQLP LNQHIAMYPQ FKVSRRKSRG SRMKPHQIHP TQSPDHPDSK  60
SQLVLYDNSP ESKRQKRAAV NDFYDSAETK SSALERAEDF RATLPTDMPS FAKTLVRSNV  120
TVGFWMHLPM RFCKSHLPKT DTTVLVENEI GAEYVINYIA DRTALSGGWK AFCGAHKLNE  180
GDVLVFQMVK PLRFKVYVVR GNGSSGKVEE DDFVQDTSSG RKQMITAKEE TEYNRSRKRL  240
ESPPASLSRE NQEENGLKSN SNTHDRSEKS QEEEPSSENM EIVASSTEPG PDFMDITCIE  300
DFSVVVNGTA IDEELSDHHR KKYYELCSSQ KAILHRNLLN SISCKLAAEI ISGTVDIAES  360
IRSSSLSSSH GEYAVWQKTL KGFQFLGMKV GFLCDRLEKL IRLAMESEAA VESERREVQM  420
RQARVSEEME ILELKLAELK ERRKMLDEEI ETLKVTAEKH EVMFQEVVNA PW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019873
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066892.11e-177B3 domain-containing protein Os01g0234100 isoform X1
TrEMBLA0A067L1H91e-176A0A067L1H9_JATCU; Uncharacterized protein
STRINGLus100198730.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-33B3 family protein