PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019872
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 450aa    MW: 50500.3 Da    PI: 7.2941
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019872genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.81.7e-17106196199
                  EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  f+k++++s+v+   +l ++++f+++h  ++   +k++ ledesg+ W+ k+   k++    l++GW++F  +++L egD+vvF+l + ++f  +v ++
  Lus10019872 106 FVKTMLRSHVTLGFWLGFSREFCDDHlPMV---DKDVELEDESGQFWNAKYLAVKQG----LSGGWRKFSVDHKLAEGDVVVFHLLRPTKF--KVYIV 194
                  89************************7433...468***************555554....9**********************9987777..88888 PP

                  -S CS
           B3  98 rk 99 
                  r+
  Lus10019872 195 RR 196
                  87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-24100197IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-20101197IPR015300DNA-binding pseudobarrel domain
CDDcd100174.45E-24104195No hitNo description
PfamPF023621.1E-15106196IPR003340B3 DNA binding domain
PROSITE profilePS5086313.281106197IPR003340B3 DNA binding domain
SMARTSM010191.6E-21106197IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MSIDQDQCIS QGVLPGRPSL VASPDGRHRK LLPVLLQRRG EDQHATLGNE HQEAAAGGSK  60
NVVPPTRKRR RASMGDLYVN VEAMNNVKNK AEEIRAKLVP DGHPTFVKTM LRSHVTLGFW  120
LGFSREFCDD HLPMVDKDVE LEDESGQFWN AKYLAVKQGL SGGWRKFSVD HKLAEGDVVV  180
FHLLRPTKFK VYIVRRNEFE EPNLNLDPTQ PSASEANNKC SKRIKAQQSA DDQLRLTEAE  240
QDDNNNNEIK GPGQEKPDRI WLQESAPDFR QAKTFEDFKI VTSNGWMING ELPEDIRFGY  300
YQLCCSRNSF LHRSILKDLN NKLVAGMFTE TVHIANAVAN SEVVTVTGED FKTWGSKLKA  360
FGKLGMEVGF LQVRLKDLKR IFDKGGKYKK LRGERVGIEE KVADLEAQLG EAKGKLEEVD  420
CEIGRLGFDA IGAELAFVEL ASAPWSSRF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16670RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019872
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100198720.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-31B3 family protein