PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10019639 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | G2-like | ||||||||
Protein Properties | Length: 305aa MW: 34256.6 Da PI: 7.1297 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 94.4 | 8.9e-30 | 190 | 245 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+ Fv+++e+LGG++ AtPk+i++ m+v+gLt+++vkSHLQkYRl+ Lus10019639 190 KQRRCWAPELHRLFVDVLEELGGPHAATPKQIRDKMQVEGLTNDEVKSHLQKYRLH 245 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.151 | 187 | 247 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.11E-14 | 188 | 248 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.3E-26 | 188 | 248 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-24 | 190 | 245 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.0E-6 | 192 | 243 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MELSLDLGPV FVPKTVDQCL KEVSKLKDSN QKLSKLDDFV NRLEDERRKI DGFRRELPLC 60 FLLLTDVILK LKEEALVVKR NCCGEDDEEG KNKKQSWMES VQLWRNGDST CKSEQKQRSD 120 EEDNRSTCEN PIKKGSSGVR KEEEKEVVSQ ATELSLMTPF AAATQQVKVF HETVNNNKPR 180 LGLGQQFNKK QRRCWAPELH RLFVDVLEEL GGPHAATPKQ IRDKMQVEGL TNDEVKSHLQ 240 KYRLHIRKHS ASPTAQAKYG GNCNETSNDV NLLQSSSPQG PLVGSDGISE SHDSSNGAIE 300 KANV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10019639 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021629713.1 | 2e-95 | transcription factor HHO5-like | ||||
TrEMBL | A0A2C9UW84 | 4e-94 | A0A2C9UW84_MANES; Uncharacterized protein | ||||
STRING | Lus10019639 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1208 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37180.1 | 1e-65 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10019639 |