PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10019543

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bZIP

Protein Properties

Length: 475aa MW: 53336.1 Da PI: 6.8621

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10019543	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.4	2e-10	174	214	4	44
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 k+ rr+++NReAAr+sR+RKka++++Le +L++ ++ Lus10019543 174 AKALRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQE 214 6999*************************876666665554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-6	171	242	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.082	173	217	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.0E-7	174	214	IPR004827	Basic-leucine zipper domain
CDD	cd14708	4.37E-22	175	227	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.3E-9	175	219	No hit	No description
SuperFamily	SSF57959	4.01E-7	177	218	No hit	No description
PROSITE pattern	PS00036	0	178	193	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.8E-31	250	325	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MVSNGMGKTH HDPYALFNGI NPPSTTFIHS DGPDFDFGEL EEAILLQGGV KIRNDERPLR 60 EGADAVAAAA GKTLEIMFPS WPMRFQHAYT PTILPEQQGS SRSGEESTDD DSGSAVNTIT 120 VKTDQYHHHQ NQGKRSAPPA SSFSDHFQQH HQMEISAAGN DQGKVTPPEK SLDAKALRRL 180 AQNREAARKS RLRKKAYVQQ LESSRIKLSQ LEQELHRARQ QGVFIGGNLS SAAAMFDAEY 240 GRWVEEDLRQ MSELQSALHS QLSESELREV VERYVCHYDE IFRLKGATAK SDVFHLITGM 300 WCTSAERCFH WMGGFRPSDL IKMLISQLDP LTEQQVMGIY SLQHSTQQAE EALTQGLEQL 360 QHSLVGTIAA PADWMQQMAI ALAKVSNLQS FLRQADNLRQ QTIHQLRRIL TVRQAARCFL 420 VIGEYYGRLR ALSSLWASRP REVVISEEKS CQMITSDVQM VQLPPPQHSH FASF*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MVSNGMGKTH HDPYALFNGI NPPSTTFIHS DGPDFDFGEL EEAILLQGGV KIRNDERPLR  60
EGADAVAAAA GKTLEIMFPS WPMRFQHAYT PTILPEQQGS SRSGEESTDD DSGSAVNTIT  120
VKTDQYHHHQ NQGKRSAPPA SSFSDHFQQH HQMEISAAGN DQGKVTPPEK SLDAKALRRL  180
AQNREAARKS RLRKKAYVQQ LESSRIKLSQ LEQELHRARQ QGVFIGGNLS SAAAMFDAEY  240
GRWVEEDLRQ MSELQSALHS QLSESELREV VERYVCHYDE IFRLKGATAK SDVFHLITGM  300
WCTSAERCFH WMGGFRPSDL IKMLISQLDP LTEQQVMGIY SLQHSTQQAE EALTQGLEQL  360
QHSLVGTIAA PADWMQQMAI ALAKVSNLQS FLRQADNLRQ QTIHQLRRIL TVRQAARCFL  420
VIGEYYGRLR ALSSLWASRP REVVISEEKS CQMITSDVQM VQLPPPQHSH FASF*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10019543

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017609047.1	0.0	PREDICTED: transcription factor TGA2-like isoform X1
Swissprot	Q93XM6	1e-177	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A067KMV4	0.0	A0A067KMV4_JATCU; Uncharacterized protein
STRING	Lus10019543	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4555	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-178	bZIP family protein

Link Out ? help Back to Top
Phytozome	Lus10019543

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]