PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10019452

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

G2-like

Protein Properties

Length: 620aa MW: 68689 Da PI: 6.1103

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10019452	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88	9.2e-28	445	495	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQ Lus10019452 445 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQ 495 68************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.678	442	502	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.0E-23	442	495	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.66E-12	443	495	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-22	445	495	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence Send to blast
MASPSELSLD CKPHSHSLLL KSFSDQIVAN NAPRDDQKHK LEEFLSRLEE ERIKIDAFKR 60 ELPLCMQLLT NAMESSRQQL EAYRGSRQQP AAVVLEEFIP MKNTVAPPPP SSSSDQIVVS 120 TDNKANWMTT AQLWSQDTKP ALHHEKDETF LRDDNNSTMG FSVMKQRRNS CNGSTGAFLP 180 FSKERNNDSN CTLALAASTE NNSNKLDHEE EDEKIVANNA PRDDQKHKLE EFLSRLEEER 240 IKIDAFKREL PLCMQLLTNA MESSRQQLEA YRGSRQQPAA VVLEEFIPMK NTVAPPPPSS 300 SSDQIVVSTD NKANWMTTAQ LWSQDTKPAL HHEKDETFLR DDNNSTMGFS VMKQRRNSCN 360 GSTGAFLPFS KERNNDSNCT LALAASTENN SNKLDHEEED EKVKCSDQPV NVIINGFSSE 420 SNGGGGNATA AVAAAATGGS NSQRKARRCW SPDLHRRFVN ALQMLGGSQV ATPKQIRELM 480 KVDGLTNDEV KSHLQFGITT AHPPPPSHFY SVPPPQDYYT AAGLPMQALP PPHTPPTSHH 540 HLHHHHQIQL YKASPSSQAH SSGQDSDDRA AGDRSESIED GKSESGSWKA GESGDNAGGD 600 GGERKDREEC NRREITLKF*

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence Send to blast

MASPSELSLD CKPHSHSLLL KSFSDQIVAN NAPRDDQKHK LEEFLSRLEE ERIKIDAFKR  60
ELPLCMQLLT NAMESSRQQL EAYRGSRQQP AAVVLEEFIP MKNTVAPPPP SSSSDQIVVS  120
TDNKANWMTT AQLWSQDTKP ALHHEKDETF LRDDNNSTMG FSVMKQRRNS CNGSTGAFLP  180
FSKERNNDSN CTLALAASTE NNSNKLDHEE EDEKIVANNA PRDDQKHKLE EFLSRLEEER  240
IKIDAFKREL PLCMQLLTNA MESSRQQLEA YRGSRQQPAA VVLEEFIPMK NTVAPPPPSS  300
SSDQIVVSTD NKANWMTTAQ LWSQDTKPAL HHEKDETFLR DDNNSTMGFS VMKQRRNSCN  360
GSTGAFLPFS KERNNDSNCT LALAASTENN SNKLDHEEED EKVKCSDQPV NVIINGFSSE  420
SNGGGGNATA AVAAAATGGS NSQRKARRCW SPDLHRRFVN ALQMLGGSQV ATPKQIRELM  480
KVDGLTNDEV KSHLQFGITT AHPPPPSHFY SVPPPQDYYT AAGLPMQALP PPHTPPTSHH  540
HLHHHHQIQL YKASPSSQAH SSGQDSDDRA AGDRSESIED GKSESGSWKA GESGDNAGGD  600
GGERKDREEC NRREITLKF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10019452

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022027337.1	1e-101	myb family transcription factor EFM-like
TrEMBL	B9H993	4e-99	B9H993_POPTR; Uncharacterized protein
STRING	Lus10019452	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5466	34	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	2e-58	G2-like family protein

Link Out ? help Back to Top
Phytozome	Lus10019452