PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10017830 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ERF | ||||||||
Protein Properties | Length: 228aa MW: 24727.9 Da PI: 4.7308 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.9 | 2.1e-12 | 39 | 87 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r++ g+Wv+eIr+p++ + r++lg+f ae Aa+ ++aa++ l+g Lus10017830 39 NYRGIRYRG--GKWVSEIREPRK---TNRIWLGTFPAAEIAAAGYDAAALGLKG 87 69****975..*********854...49*********************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.76E-13 | 38 | 103 | No hit | No description |
Pfam | PF00847 | 4.1E-6 | 38 | 86 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-18 | 39 | 107 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-21 | 39 | 102 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-12 | 39 | 91 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.307 | 39 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MADPYNNYYN YSYPAPHPNN NNAPTNSTSP PSSSSKHPNY RGIRYRGGKW VSEIREPRKT 60 NRIWLGTFPA AEIAAAGYDA AALGLKGANA LKGDEAVLNF PEAAGSYPIP ASSSAADIRN 120 AAAAAAAIKK DEIMRATWSS TSINDHNHEQ GLTSNFNEFG SGATANYSGD DQFVDEEALF 180 DMPNLLVNMA QGMMVSPPRF PTYDDGCYYS QEDDHTRNGD SLWSGYY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10017830 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10017830 | 1e-167 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF562 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12630.1 | 7e-25 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10017830 |