PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10017725

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Trihelix

Protein Properties

Length: 389aa MW: 44433.8 Da PI: 4.1876

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10017725	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.6	1.3e-12	122	204	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++qe +L+e+ e+ +l+r++l+ +W ev++k+ +e ++ers qC+ +++l++ry+k+k+ + ++s+++++++++ Lus10017725 122 EWSEQEKFVLLEVWGERFLQLGRNSLRSVDWVEVAEKVsEELKIERSEAQCRLLMDSLKRRYRKEKAKGGH----VVSKWAFYRKMD 204 5***********************************8889********************99997....5889****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.9E-19	122	206	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MDHTEDDGRY PHKAYPHNRT TKKSSMYSHR PVSSFYNRHD YAGNDDPEED EEDDFDDNGM 60 ESDDNNDIGR GYPNDFEEKD GFGRYPKRQK KVKNSVSNNY ELVPRSRMAS HNNHGESDFP 120 GEWSEQEKFV LLEVWGERFL QLGRNSLRSV DWVEVAEKVS EELKIERSEA QCRLLMDSLK 180 RRYRKEKAKG GHVVSKWAFY RKMDMLMRQE NGSVGSSSGG FSLSCGVDSG EYVFMDTGVY 240 LERANGFDEM RDSPCESEED DDDEEDDDKG EVSGDMFKGL TVLADSVHKF GEIYEKIESS 300 KRDQMLELER MRVDFQRELE LQKKQILEKA QTEISKIRDE DDGDEEEEED TDTDSDGAAD 360 GVDDNGDGEA IESDNESGDD DLGVNVSG*

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MDHTEDDGRY PHKAYPHNRT TKKSSMYSHR PVSSFYNRHD YAGNDDPEED EEDDFDDNGM  60
ESDDNNDIGR GYPNDFEEKD GFGRYPKRQK KVKNSVSNNY ELVPRSRMAS HNNHGESDFP  120
GEWSEQEKFV LLEVWGERFL QLGRNSLRSV DWVEVAEKVS EELKIERSEA QCRLLMDSLK  180
RRYRKEKAKG GHVVSKWAFY RKMDMLMRQE NGSVGSSSGG FSLSCGVDSG EYVFMDTGVY  240
LERANGFDEM RDSPCESEED DDDEEDDDKG EVSGDMFKGL TVLADSVHKF GEIYEKIESS  300
KRDQMLELER MRVDFQRELE LQKKQILEKA QTEISKIRDE DDGDEEEEED TDTDSDGAAD  360
GVDDNGDGEA IESDNESGDD DLGVNVSG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10017725

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012076661.1	1e-118	trihelix transcription factor ASIL2
Refseq	XP_012076662.1	1e-118	trihelix transcription factor ASIL2
Refseq	XP_020536412.1	1e-118	trihelix transcription factor ASIL2
Refseq	XP_020536413.1	1e-118	trihelix transcription factor ASIL2
TrEMBL	A0A067KF82	1e-117	A0A067KF82_JATCU; Uncharacterized protein
STRING	Lus10017725	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	2e-72	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Lus10017725