PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016827
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 278aa    MW: 30124.9 Da    PI: 7.1396
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016827genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.32.8e-2187136255
          AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   y+G+r+++ +g+W+AeIrd +     + +r++lg++ taeeAa+a+++a+k+++g
  Lus10016827  87 VYRGIRQRP-WGKWAAEIRDpF-----KgTRVWLGTYNTAEEAARAYDEAAKRIRG 136
                  69*******.**********55.....45************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-1587136IPR001471AP2/ERF domain
PROSITE profilePS5103224.03987144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-3287145IPR001471AP2/ERF domain
SMARTSM003801.9E-3587150IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2387144IPR016177DNA-binding domain
PRINTSPR003677.6E-128899IPR001471AP2/ERF domain
CDDcd000182.65E-3388144No hitNo description
PRINTSPR003677.6E-12110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MCGGGVIFCA IISGFVDEKS GRRLKAKQLW SELDTLSDFI GFDFPVADTK PNTIPRVISS  60
KDVADLEKSS DSKVSKKKSQ QRARKNVYRG IRQRPWGKWA AEIRDPFKGT RVWLGTYNTA  120
EEAARAYDEA AKRIRGDKAK LNFPSAAAAN KKSPPHSVVD QQAESGASSL SPPPAKKQRC  180
FSVDSAPVET APPPPSPLAC GGYGFEETEV SGGAYELKKQ ISSLESFLEL EPEENAATLP  240
VISGGSEEVA AADLWMLDDL VNQYQYQQSV LPSGMAY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2288144360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-2283144163ATERF1
3gcc_A8e-2283144163ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016827
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022760600.12e-74ethylene-responsive transcription factor RAP2-3-like isoform X2
TrEMBLA0A0B0MUY49e-73A0A0B0MUY4_GOSAR; Ethylene-responsive transcription factor RAP2-3-like protein
TrEMBLA0A1U8IGZ58e-73A0A1U8IGZ5_GOSHI; ethylene-responsive transcription factor RAP2-3
TrEMBLQ56E957e-73Q56E95_GOSHI; Putative ethylene responsive element binding protein 2
STRINGLus100168270.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48923353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-40ethylene-responsive element binding protein