PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016254
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 370aa    MW: 39922.4 Da    PI: 8.5948
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016254genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.4e-18187241256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ +++k+q   Lee F+++++++ +++ eLAk+l+L  rqV vWFqNrRa+ k
  Lus10016254 187 RKKLRLSKDQSAFLEESFKEHNTLNPKQKLELAKQLNLRPRQVEVWFQNRRARTK 241
                  678899***********************************************98 PP
2HD-ZIP_I/II127.65.3e-41187276191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlsk+q+++LEesF+e+++L+p++K ela++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l
  Lus10016254 187 RKKLRLSKDQSAFLEESFKEHNTLNPKQKLELAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-AL 276
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-17169244IPR009057Homeodomain-like
SuperFamilySSF466891.71E-18180244IPR009057Homeodomain-like
PROSITE profilePS5007117.346183243IPR001356Homeobox domain
SMARTSM003891.2E-16185247IPR001356Homeobox domain
CDDcd000862.01E-16187244No hitNo description
PfamPF000467.3E-16187241IPR001356Homeobox domain
PROSITE patternPS000270218241IPR017970Homeobox, conserved site
PfamPF021838.1E-11243277IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.6E-25243286IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MELALSLGDA SKPFKFLDKI APTKLSTNDH HLGFCIALSG AGVGGAGSTA SSMARSQGII  60
EDARRLNVPS IADSQPSLQL DLSPFSPVPR RLTPATAAPS PSPLPFPWLV TDPAQRESQS  120
RRFDVNRLSA EEGDDADGAS LSSPNSAATS SFRMDFGIGI NSNGKRDLDQ ESERAAGSED  180
DENGSGRKKL RLSKDQSAFL EESFKEHNTL NPKQKLELAK QLNLRPRQVE VWFQNRRART  240
KLKQTEVDCE YLKRCCETLT EENRRLQKEL QELRALKSSQ PFYLQHPATT LTMCPSCERV  300
ATTSTAATSS TTAAPASTTT TTTNSSSTTL SLGNNSSNGK VGKGYPFPSV QLQMSSQQHS  360
SQPTKPAGS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235243RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016254
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322729.21e-125homeobox-leucine zipper protein HOX11
SwissprotP466654e-89HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLB9IIA11e-124B9IIA1_POPTR; HD-ZIP family protein
STRINGLus100162540.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23353382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-79homeobox from Arabidopsis thaliana