PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015902
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 398aa    MW: 45065.1 Da    PI: 6.4668
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015902genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.8e-13130181155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Lus10015902 130 QRTTHIAVERNRRKQMNHYLALLRSLMPPS---YVQRGDQASIIGGAINFVKELE 181
                  79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.01E-12128185No hitNo description
PROSITE profilePS5088814.716129180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-12129184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-15129199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-10130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-9135186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MALEAVIYSL DPFAYSNNNK EHYYGLLQLD NDYNNSTSSP TQHQQLHHVA ATSSYWDSGI  60
QVPQLLLHDV TSYNNYHSSS PEPCNQQQHQ HQFYKTDEMV EEDPPSSSIR RKRRRRTKSR  120
SKNKEEIENQ RTTHIAVERN RRKQMNHYLA LLRSLMPPSY VQRGDQASII GGAINFVKEL  180
EQILQAVEAR RTTAHQHHQQ DDDDREAPCN NNGDQASIIG GAINFVKELE QILQAAEAGR  240
TTTSHQQDDN DRPTPSNNNV RLPSSSLFAD FFTFPQYSTH LTQPEVPVEV AESSSSDTPR  300
NFATAVGEIE VTMVESHANI KILAKKQPSQ LLKLVAQMQN LRLTILHLNV TTTAHQKMVL  360
YSLSIKLEEG CHLNTVDEIA AAVNEMLRRI QEEAAFT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109115RRKRRRR
2110114RKRRR
3110116RKRRRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015902
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100159020.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-73bHLH family protein