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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Lus10015726 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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| Family | M-type_MADS | ||||||||
| Protein Properties | Length: 200aa MW: 22012.1 Da PI: 10.039 | ||||||||
| Description | M-type_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 76.4 | 2.1e-24 | 23 | 68 | 1 | 46 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
k+ien+ nr+vtfskR+ g++KKA ELS+LC+a+vaviifs + k+
Lus10015726 23 KKIENDANRYVTFSKRKSGLFKKATELSTLCGAQVAVIIFSGHHKV 68
68***************************************88776 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50066 | 25.749 | 15 | 75 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 7.7E-33 | 15 | 74 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 3.92E-28 | 16 | 88 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 4.96E-34 | 16 | 87 | No hit | No description |
| PRINTS | PR00404 | 1.5E-20 | 17 | 37 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 4.6E-24 | 24 | 70 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.5E-20 | 37 | 52 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.5E-20 | 52 | 73 | IPR002100 | Transcription factor, MADS-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 200 aa Download sequence Send to blast |
MTSGAAGKKA KKPSKGRQKI EIKKIENDAN RYVTFSKRKS GLFKKATELS TLCGAQVAVI 60 IFSGHHKVFS CGRPDVDSVL RRYQLHSPNL TLNPNNNDRR GNAVNYSDCK ASFGIDNVIM 120 ASRESVQKQE YVKAVKMLEE GKRHVAAQAG LGDPTTVSGG FWWEDWAVDA MEEKDQVQSC 180 KESLMELKEK VSARLGSMG* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1egw_A | 2e-17 | 16 | 83 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1egw_B | 2e-17 | 16 | 83 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1egw_C | 2e-17 | 16 | 83 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1egw_D | 2e-17 | 16 | 83 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 3kov_A | 2e-17 | 16 | 83 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3kov_B | 2e-17 | 16 | 83 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3kov_I | 2e-17 | 16 | 83 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3kov_J | 2e-17 | 16 | 83 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3mu6_A | 1e-17 | 16 | 83 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3mu6_B | 1e-17 | 16 | 83 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3mu6_C | 1e-17 | 16 | 83 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3mu6_D | 1e-17 | 16 | 83 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3p57_A | 2e-17 | 16 | 83 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3p57_B | 2e-17 | 16 | 83 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3p57_C | 2e-17 | 16 | 83 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3p57_D | 2e-17 | 16 | 83 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3p57_I | 2e-17 | 16 | 83 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3p57_J | 2e-17 | 16 | 83 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 5f28_C | 2e-17 | 16 | 83 | 2 | 69 | MEF2C |
| 5f28_D | 2e-17 | 16 | 83 | 2 | 69 | MEF2C |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Lus10015726 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| STRING | Lus10015726 | 1e-148 | (Linum usitatissimum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF128 | 33 | 331 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G60440.1 | 2e-25 | AGAMOUS-like 62 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Lus10015726 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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