PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10015282 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | Trihelix | ||||||||
Protein Properties | Length: 162aa MW: 18073.2 Da PI: 10.456 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 46.1 | 1.3e-14 | 30 | 120 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +L+ea ++ +l+rg+l++++W++v++ + ++ r+ +qCk++ + ++k+yk +k++ + +s++++fd+l+ Lus10015282 30 CWSEEATATLVEAWGYRYLALNRGNLRQKDWKDVADTVnsihgLTKKTYRTDVQCKNRVDTIKKKYKVEKTRVAASNGAITSSWRFFDRLD 120 7*************************************99999899999**********************99999899999*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.4E-24 | 28 | 122 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MGDLTDSGTT PNPNPNSSST SRPMPIREDC WSEEATATLV EAWGYRYLAL NRGNLRQKDW 60 KDVADTVNSI HGLTKKTYRT DVQCKNRVDT IKKKYKVEKT RVAASNGAIT SSWRFFDRLD 120 SLVGSNFSGA AGSVSDEHHQ RRASPPSLGN LSRLRLRLRC R* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10015282 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022715762.1 | 2e-65 | trihelix transcription factor ASIL1-like isoform X3 | ||||
Refseq | XP_022715763.1 | 2e-65 | trihelix transcription factor ASIL1-like isoform X3 | ||||
Swissprot | Q9LJG8 | 6e-37 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A2P2KXN4 | 2e-64 | A0A2P2KXN4_RHIMU; Uncharacterized protein MANES_17G056000 | ||||
TrEMBL | A0A2P2KXN5 | 3e-64 | A0A2P2KXN5_RHIMU; Uncharacterized protein MANES_17G056000 | ||||
STRING | Lus10015282 | 1e-117 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1887 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58630.1 | 1e-41 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Lus10015282 |