PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015055
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family AP2
Protein Properties Length: 487aa    MW: 53798.6 Da    PI: 6.9834
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015055genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-17188237155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Lus10015055 188 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 237
                  78*******************......55************************997 PP
2AP240.18.8e-13280326151
          AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaark 51 
                  s+++GV+ +k  g+W+A+       g    +k+++lg ++t+ eAa+a++ a+ 
  Lus10015055 280 SKFRGVTHHK-CGKWEAR---T---GqllGKKYIYLGLYDTEIEAARAYDMAAI 326
                  79*****777.8******...7...445446**********99********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.6E-9188237IPR001471AP2/ERF domain
CDDcd000184.71E-11188247No hitNo description
SuperFamilySSF541712.94E-15188246IPR016177DNA-binding domain
PROSITE profilePS5103217.385189245IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-16189245IPR001471AP2/ERF domain
SMARTSM003808.2E-31189251IPR001471AP2/ERF domain
PfamPF008478.9E-8280328IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-16280339IPR016177DNA-binding domain
CDDcd000188.00E-23280338No hitNo description
PROSITE profilePS5103215.369281338IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-15281338IPR001471AP2/ERF domain
SMARTSM003806.4E-29281344IPR001471AP2/ERF domain
PRINTSPR003675.0E-5282293IPR001471AP2/ERF domain
PRINTSPR003675.0E-5320340IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MLVDLNLTMV SPAVNRNSFA SGDNMKRRFD FSPSNYQLDS SGSFNSSSVI NVDSNSNANA  60
VVPGDDDSCS IHYNHGDLFG YSFRILTEDQ RASKKKMAVE EDDDKNNHND RTIQLFPVSE  120
GGVGRGRGVN AVAQCFGASK VWLDLGGREV EHGGLAEKVV AATAQVQQQQ QPKPPAKKNR  180
RGPRSKSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGVDA  240
DINYNVSDYD DDIKQMSNFT KEEFVHILRR QSTGFSRGSS KFRGVTHHKC GKWEARTGQL  300
LGKKYIYLGL YDTEIEAARA YDMAAIDCNG RDAVTNFEPN SYDGEIMSEV KPEDQSLDLN  360
LGIAPPDAHE GRRVKSNASS FSIPVGLDKD STTLNSASGT MNGHNQLSHG LPMETEVCPA  420
RDGINGCHFP VYKERAMEKR EGGVDPLLNW AWKLQSPYDK EKPQPFFSSS AASSGFSSVF  480
DSYYCA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015055
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381502.11e-142floral homeotic protein APETALA 2 isoform X1
SwissprotB8AMA91e-102AP22_ORYSI; APETALA2-like protein 2
SwissprotQ84TB51e-102AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A385JI361e-141A0A385JI36_POPTO; Target of early activation tagged 1
TrEMBLB9MT781e-141B9MT78_POPTR; Uncharacterized protein
STRINGLus100150550.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.24e-81AP2 family protein
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]