PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014698
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 379aa    MW: 42961.3 Da    PI: 5.3869
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014698genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.36.6e-35431332101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++e+++d+ +++++sws+ g+sfvv+d+++f++++Lp++Fkh+nf+SFvRQLn+YgF+k++ e+         weF++++F +g+k+ll++i+
   Lus10014698  43 FLTKTFEMVDDPFTNHVVSWSRGGTSFVVWDPHSFSTNLLPRFFKHNNFSSFVRQLNTYGFRKIDPER---------WEFANEEFLRGHKHLLKNIR 130
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
   Lus10014698 131 RRK 133
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.9E-3539132IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-5939132IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.9E-3839132IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.1E-3143132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-194366IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-198193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434082106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-1994106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MNNFFTVKEE YPGDTPAMTT AMTTVVPPPQ PMEGLHDAGP PPFLTKTFEM VDDPFTNHVV  60
SWSRGGTSFV VWDPHSFSTN LLPRFFKHNN FSSFVRQLNT YGFRKIDPER WEFANEEFLR  120
GHKHLLKNIR RRKAPLPPPP PSLSPYPSPS QSFYATIPNQ APGTSAVELG QFGLDGELGR  180
LKRDKQVLTM ELVKLRQQQQ STKAYVTELE QRLQGTECKQ QQMMRFLARA VQNPAFLHQL  240
AQRKEKRKEL EEALSKKRRR PIEQRRGKNL VGESSNWRQV IKPEPVEYGI GSPFGLTELE  300
ALALEMQGIG KGVRQEREEE ADGVEEDGEE LEATSDRELD DGFWEELLNE STGGVGEDQE  360
DVNTLAEQLG YLSSSSPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-243813221129Heat shock factor protein 1
5d5v_B4e-243813221129Heat shock factor protein 1
5d5v_D4e-243813221129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245259KRKELEEALSKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014698
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022759739.11e-157heat stress transcription factor A-7a-like
SwissprotQ9LUH81e-123HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A1U8NS091e-155A0A1U8NS09_GOSHI; heat stress transcription factor A-7a-like
STRINGLus100146980.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-103heat shock transcription factor A6B