PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10014345 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ERF | ||||||||
Protein Properties | Length: 225aa MW: 24982.8 Da PI: 11.6311 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.8 | 1.3e-18 | 75 | 124 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr ++ +gr+ AeIrd + g r r++lg+f+taeeAa a++ a+++l+g+ Lus10014345 75 YRGVRKRP-WGRFSAEIRDrV---G-RCRHWLGTFDTAEEAALAYDSAALRLRGA 124 9*******.**********55...2.59*************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.1E-13 | 74 | 123 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.12E-20 | 74 | 131 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.29E-26 | 74 | 130 | No hit | No description |
PROSITE profile | PS51032 | 21.298 | 74 | 131 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.2E-31 | 74 | 137 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-28 | 74 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.9E-10 | 75 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.9E-10 | 97 | 113 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MSTSFFPQPQ GTDHLFQEAV ETVPVLEGIA AVVGEEILYG TTTIRRATSC TRVNEQQQGG 60 GDHHHQATTG GARNYRGVRK RPWGRFSAEI RDRVGRCRHW LGTFDTAEEA ALAYDSAALR 120 LRGAKAKTNF LVVPSTSLLP SPTSLRPHQK NTTRSHRKKR RETTAIVVVV IVMNGRWRLV 180 RRLVFSAVVV MVVMDSAVLV ITTLVVVVVL VVVRWGWSWS WGLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-19 | 73 | 130 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-18 | 73 | 130 | 4 | 62 | ATERF1 |
3gcc_A | 1e-18 | 73 | 130 | 4 | 62 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10014345 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011045670.1 | 3e-39 | PREDICTED: ethylene-responsive transcription factor ERF084-like | ||||
STRING | Lus10014345 | 1e-161 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13023 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80580.1 | 2e-19 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10014345 |