PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10013103

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

HD-ZIP

Protein Properties

Length: 244aa MW: 27598 Da PI: 8.7533

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10013103	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.7	8.3e-18	43	96	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ ++t+eq+++Le+ F n+++ e + eLA++lg++ rqV +W+qN+Ra++k Lus10013103 43 QKKRLTQEQVRVLERSFSFNKKLFPELKSELASQLGVPPRQVAIWYQNKRARWK 96 56789************************************************9 PP
2	HD-ZIP_I/II	99.6	2.8e-32	43	134	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rl++eqv++LE+sF+ ++kL pe K+ela++Lg+ prqva+W+qn+RAR+kt+ lE d+++L ++++ + +++rLekev++L++el++ Lus10013103 43 QKKRLTQEQVRVLERSFSFNKKLFPELKSELASQLGVPPRQVAIWYQNKRARWKTQTLELDHNTLELKLQNAAVNKRRLEKEVARLHHELSK 134 69*************************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.374	38	98	IPR001356	Homeobox domain
SMART	SM00389	6.0E-15	40	102	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.54E-16	40	106	IPR009057	Homeodomain-like
Pfam	PF00046	4.0E-15	43	96	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-17	45	103	IPR009057	Homeodomain-like
CDD	cd00086	2.79E-14	46	98	No hit	No description
PRINTS	PR00031	6.7E-5	69	78	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	73	96	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.7E-5	78	94	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MNMNPSNNNR FNLNPQSGKS AIIMDFHETQ QQQKQQQQMK RPQKKRLTQE QVRVLERSFS 60 FNKKLFPELK SELASQLGVP PRQVAIWYQN KRARWKTQTL ELDHNTLELK LQNAAVNKRR 120 LEKEVARLHH ELSKAQDTVV ASVNHCRHGG CTTSSTIPPA NLLDHHHLPP APITIPAPSD 180 VDQHYDDACP PMKMNPCGSS SDINFNNIHG RREEVNLQLE DELYASFVMG GNSGSSGSTC 240 SWD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10013103

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ884713	2e-50	HQ884713.1 Linum usitatissimum clone Contig524 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012076694.2	7e-53	homeobox-leucine zipper protein ATHB-52
TrEMBL	A0A067LF56	2e-51	A0A067LF56_JATCU; Uncharacterized protein
STRING	Lus10013103	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11011	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	3e-29	homeobox protein 52

Link Out ? help Back to Top
Phytozome	Lus10013103