PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10012845 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 270aa MW: 30167.5 Da PI: 7.3051 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.6 | 9.2e-18 | 50 | 103 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Lus10012845 50 KKRRLNMEQVRTLEKNFELANKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 103 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 131 | 4.7e-42 | 49 | 141 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eqv++LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr+++ +k++n++L++++++L++e+++ Lus10012845 49 EKKRRLNMEQVRTLEKNFELANKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQFEGVKADNDSLQSQNQKLHAEIMA 141 69**************************************************************************************99975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.05E-19 | 44 | 107 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.103 | 45 | 105 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-16 | 48 | 109 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.01E-16 | 50 | 106 | No hit | No description |
Pfam | PF00046 | 3.7E-15 | 50 | 103 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-19 | 52 | 112 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.0E-5 | 76 | 85 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 80 | 103 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.0E-5 | 85 | 101 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.0E-16 | 105 | 145 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 270 aa Download sequence Send to blast |
MASFLGKRSM SCSGINDAAN NNNNCHDQEG GGLMNGEEDF SDDGSMAGEK KRRLNMEQVR 60 TLEKNFELAN KLEPERKMQL ARALGLQPRQ IAIWFQNRRA RWKTKQLEKD YDVLKRQFEG 120 VKADNDSLQS QNQKLHAEIM ALKGRGPTHE AINLNKETEG SCSNRSESSS DIKLDISRSN 180 TPAAIDSPLS STPNGRPFFP TTSSSHHHNV RAPLVPSNGV AQLFHNNSTR PQSASVDQIV 240 KEESLTTMFY GIDDQSAGFW PWLEPHHFN* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 97 | 105 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10012845 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002520111.1 | 1e-126 | homeobox-leucine zipper protein ATHB-13 | ||||
Refseq | XP_015575250.1 | 1e-126 | homeobox-leucine zipper protein ATHB-13 | ||||
Swissprot | Q8LC03 | 2e-93 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | B9S292 | 1e-125 | B9S292_RICCO; Homeobox protein, putative | ||||
STRING | Lus10012845 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1271 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69780.1 | 8e-89 | HD-ZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10012845 |
Publications ? help Back to Top | |||
---|---|---|---|
|