PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10012457 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 253aa MW: 28902.2 Da PI: 9.4444 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.2 | 6.1e-13 | 85 | 132 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L ++P + kK++Ka++L A++Y+k+Lq Lus10012457 85 QDHVIAERKRREKLSQKFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 132 6799************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.948 | 82 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-10 | 85 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.32E-17 | 85 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.4E-17 | 86 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.26E-11 | 87 | 136 | No hit | No description |
SMART | SM00353 | 7.1E-15 | 88 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MEDHSHFINQ WRQMESSNNS SFGVPTLENG LFNTTMPSHH HALEMGFLKP KQETAENMYL 60 SQQNWFGNHH NIISKGRIRM SQQSQDHVIA ERKRREKLSQ KFIALSAIVP GLKKMDKASV 120 LGDAIKYLKQ LQERVKTLEE QTRNKSMESA KVVVKKSQVF DECGSSEQLP EIEARFSDRH 180 VLIRVHCEKK KGLLEKTVAE IEKLHLTVIN TSVLTFGSSA LDLTIITQMD VEFNMTVKEV 240 VQKLHPAFSL FN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-14 | 86 | 135 | 8 | 57 | Transcription factor MYC2 |
5gnj_B | 2e-14 | 86 | 135 | 8 | 57 | Transcription factor MYC2 |
5gnj_E | 2e-14 | 86 | 135 | 8 | 57 | Transcription factor MYC2 |
5gnj_F | 2e-14 | 86 | 135 | 8 | 57 | Transcription factor MYC2 |
5gnj_G | 2e-14 | 86 | 135 | 8 | 57 | Transcription factor MYC2 |
5gnj_I | 2e-14 | 86 | 135 | 8 | 57 | Transcription factor MYC2 |
5gnj_M | 2e-14 | 86 | 135 | 8 | 57 | Transcription factor MYC2 |
5gnj_N | 2e-14 | 86 | 135 | 8 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 90 | 95 | ERKRRE |
2 | 91 | 96 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10012457 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006486799.1 | 2e-91 | transcription factor bHLH25-like | ||||
Refseq | XP_015388301.1 | 2e-91 | transcription factor bHLH25-like | ||||
Swissprot | Q9T072 | 2e-57 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A2H5QA05 | 5e-90 | A0A2H5QA05_CITUN; Uncharacterized protein | ||||
STRING | Lus10012457 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF455 | 34 | 164 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 8e-60 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10012457 |