PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012449
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family M-type_MADS
Protein Properties Length: 243aa    MW: 26955.1 Da    PI: 9.0189
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012449genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.66.9e-23450349
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 i  +snrqvtfskRr g++KKA+EL++LC++e+a+i+fs+ +k + +
  Lus10012449  4 IVKDSNRQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPGQKAFSF 50
                 55789***********************************9987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.1E-23153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.745154IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-24269IPR002100Transcription factor, MADS-box
PfamPF003199.5E-25350IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-91631IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-93152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MVKIVKDSNR QVTFSKRRSG LFKKASELCT LCGVEIAIIV FSPGQKAFSF GHPSIQAVVD  60
RFLARNPSKT GASSSSSSSV NTFEELYEAH RNAQVRELNG QLTQVVQEVE RVKKYGEGLN  120
QLRKVRQRQY WWEAPIGELE LDQLHQLKAS LEELSQNMSN QKTTLLNMQN SSTPPPPPLQ  180
FLGPVSATAT ASSGRTDHHS NYKNYEDHDV KMSSDNLGLM SQGLDGSHSN HNYQHGLYGS  240
GF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012449
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004150272.12e-66PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ4PSU44e-46AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A2N9GC178e-66A0A2N9GC17_FAGSY; Uncharacterized protein
STRINGLus100124490.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-47AGAMOUS-like 62
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]