PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011616
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 870aa    MW: 94631.3 Da    PI: 6.5894
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011616genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-183694357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+l++++++ps  +r++L + +    +++ rq+kvWFqNrR +ek+
  Lus10011616 36 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRDCpilsHIEPRQIKVWFQNRRCREKQ 94
                 5679*****************************************************97 PP
2START180.78.4e-571763842205
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++ +g a+ra+g+v  +++  v+e+l+d++ W ++++++e+l++ s+g  ++++l +++
  Lus10011616 176 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGGNGIAARACGLVGLEPT-RVAEILKDRPSWYRDCRAVEVLNAMSTGngATIELLYMQ 272
                  7899******************************************************.8888888888*******************9********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p+   ++++vRa++lpSg+li+p+++g+s +++v+h dl+ ++++++lr+l++s++  
  Lus10011616 273 LYAPTTLAPaRDFWLLRYTSALEDGSLVVCERSLNNTQNGPSmppTHHFVRAQMLPSGYLIRPCDGGGSIIHVVDHLDLEPWSVPEVLRPLYESSILL 370
                  ****************************************99999***************************************************** PP

                  HHHHHHHHTXXXXX CS
        START 192 gaktwvatlqrqce 205
                  ++kt++a+l+++++
  Lus10011616 371 AQKTTMAALRHLRQ 384
                  *********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.2733195IPR001356Homeobox domain
SMARTSM003891.8E-153399IPR001356Homeobox domain
CDDcd000861.06E-153696No hitNo description
SuperFamilySSF466899.84E-173699IPR009057Homeodomain-like
PfamPF000463.3E-163794IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-183894IPR009057Homeodomain-like
CDDcd146861.20E-688127No hitNo description
PROSITE profilePS5084826.515166380IPR002913START domain
CDDcd088751.74E-75170385No hitNo description
Gene3DG3DSA:3.30.530.206.3E-24174381IPR023393START-like domain
SuperFamilySSF559612.2E-36175387No hitNo description
SMARTSM002349.2E-44175385IPR002913START domain
PfamPF018523.4E-54176384IPR002913START domain
PfamPF086709.7E-51728868IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
MAVTSANNSS GSSGGRGGKN NNNNMGGGGG VMDNGKYVRY TPEQVEALER LYHECPKPSS  60
LRRQQLIRDC PILSHIEPRQ IKVWFQNRRC REKQRKEASR LQAVNRKLTA MNKLLMEEND  120
RLQKQVSHLV YENTFFRQHT PTPPPPLTTT DTSCESVVTT SGHQRDAATP AGLLSIAEET  180
LAEFLSKATG TAVEWVQMPG MKPGPDSIGI VAISHGGNGI AARACGLVGL EPTRVAEILK  240
DRPSWYRDCR AVEVLNAMST GNGATIELLY MQLYAPTTLA PARDFWLLRY TSALEDGSLV  300
VCERSLNNTQ NGPSMPPTHH FVRAQMLPSG YLIRPCDGGG SIIHVVDHLD LEPWSVPEVL  360
RPLYESSILL AQKTTMAALR HLRQISQEVS QPNVHGWGRR PAALRALGQR LSKGFNEAVN  420
GFSDEGWSVL EGDGIDDVTL LVNSSPSKMM CLNFAYANGF PAMNNAVLCA KASMLLQNVP  480
PAVLLRFLRE HRSEWADSGI DAYAAAAVRA GPCGGLPVVS GAGNFGGQFM EVIKLENMGY  540
REDMMMPGDI FLLQVGVEKC YLPFSLPNCL ALAHTIAYVQ LCNGVDENAV GNCAELMFAP  600
IDASFSDDTP IIPSGFRIIP LDPGMDATSP NRTLDLASAL EVGRPSGNKA SGSVAGQSGN  660
SSSTKSVMTI AFQFGFEMHL QENVASMARQ YVRSIIASVQ RVAMALSPSG FGSQPGLRTL  720
PGSPEALTLA RWISQSYSCY LGAELLKCEA NESVLKALWH QSDAILCCSL KAVPVFTFGN  780
QAGLDMLETT MVALQDIKLE KIFDENGRKH LCSEFPQIMQ QGFMCLEGGV CMSSMGRPVS  840
YERAVAWKVL NDDEAAHCIC FMFVNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011616
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024459734.10.0homeobox-leucine zipper protein ATHB-8
RefseqXP_024459736.10.0homeobox-leucine zipper protein ATHB-8
RefseqXP_024459737.10.0homeobox-leucine zipper protein ATHB-8
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A1X9ITT90.0A0A1X9ITT9_POPTO; Truncated hemoglobin
STRINGLus100116160.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]