PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011578
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 300aa    MW: 32923.4 Da    PI: 8.9125
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011578genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.2e-12120166455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h ++Er+RR+++ ++f  L  ++P +     kK +Ka++L  A++Y+k+Lq
  Lus10011578 120 DHVMAERKRREKLSERFIALSAVVPGL-----KKTDKASVLGDAIKYLKQLQ 166
                  699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.485116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9120166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16120178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-16121182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.92E-12121167No hitNo description
SMARTSM003539.7E-15122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEVLQTEWMP ELSSDMNNNS RPAKIPKTTN NSSRASPPSS SSSPYSCIIS FDSSSSTDSV  60
PAVPQKPPRS YPPAAVIKPE YSSIENGLQY GCSVLNNATT SHGTKRPAAA MSRSPISAQD  120
HVMAERKRRE KLSERFIALS AVVPGLKKTD KASVLGDAIK YLKQLQERAK TLEEQVKRKT  180
IESVVYVKKS RVYNLDDDEL SSSTDENSDG FSSNQSLQLP EIEARVSGKD VMIRIHCEKQ  240
KGCLPKLLCE IEKLGLNVMN SNVLPFGSST LDITVVAQMD HDFSTTTIDL VRNLRKALK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124129ERKRRE
2125130RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011578
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021692404.12e-92transcription factor bHLH25-like
SwissprotQ9T0721e-64BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2C9UQF56e-90A0A2C9UQF5_MANES; Uncharacterized protein
STRINGLus100115780.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-62bHLH family protein