 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Lus10011554 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
| Family |
C2H2 |
| Protein Properties |
Length: 470aa MW: 53416.4 Da PI: 4.6743 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lus10011554 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 12.2 | 0.00054 | 161 | 177 | 1 | 17 |
EEETTTTEEESSHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLk 17
y+Cp+Cgk+++ + L+
Lus10011554 161 YVCPNCGKRYNALDALQ 177
9**********999886 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006367 | Biological Process | transcription initiation from RNA polymerase II promoter |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 470 aa
Download sequence Send
to blast |
MMSLEPWNRL VKLAARAFYD DYTTKGDNQP KIARSDNRGM AVVILDALTR RQWVREEDLA 60
KDLKMHTKQI RRTLRFFEEE KLVTRDQRKE TAKGAKQYSA AVAATTEIQN GKEGEDKVKL 120
LLHTYCCLDY AQIYDVVRYR LHRLKKKLRD ELEEKNTIQE YVCPNCGKRY NALDALQLVS 180
MVDEYFHCEN CNGELVAEND KLNVADGDTD DNTRRRRREK LKDLLQKMET QLKPLTEQLN 240
RVKDLQIPDF GNLLAWEARA IAAGRDLNGS SSNDPSKATQ GYGTPLPYLG ETKVEVAFSG 300
ADGKEEDIKP DNAGSGLKVL PPWMIKQGMN LTKEQRGEIK HESKMDGDSS SSAYSDDKKS 360
AVVDEKQSIQ DEYVKAYYAA ILKQQEELEA ARKQEELRVA PNLNAPPPES SPERQVGMKS 420
KREEDDEEDD DWEDGGGNGS SEGYRLNDLN EEAKATPEDE DDDIDWEEG*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5fyw_W | 3e-13 | 10 | 294 | 12 | 244 | TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA |
| 5fz5_W | 3e-13 | 10 | 294 | 12 | 244 | TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA |
| 5sva_h | 3e-13 | 10 | 294 | 12 | 244 | Transcription initiation factor IIE subunit alpha |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 142 | 148 | RLKKKLR |
| 2 | 214 | 219 | RRRREK |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HQ888502 | 7e-51 | HQ888502.1 Linum usitatissimum clone GMU2AYZ01AXRGQ microsatellite sequence. |
