PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011389
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARR-B
Protein Properties Length: 398aa    MW: 44662.4 Da    PI: 6.9078
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011389genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like781.1e-24197250155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Lus10011389 197 KARVVWSVDLHQKFVKAVNQI-GYDKVGPKKILDLMNVPWLTRENVASHLQKYRL 250
                  68*******************.9*******************************8 PP
2Response_reg821.9e-27211291109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l+k  y ev+++  +++al++l+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga 
   Lus10011389  21 VLVVDDDPTWLKILEKMLRKCSY-EVTTCGLARDALNKLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGAC 115
                   89*********************.***************999999**********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ ++el++
   Lus10011389 116 DYLLKPIRMKELRN 129
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.0E-1451395IPR017053Response regulator B-type, plant
SuperFamilySSF521723.42E-3618143IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.1E-4518142No hitNo description
SMARTSM004482.8E-3219131IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011044.16320135IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.7E-2421130IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.39E-3122135No hitNo description
SuperFamilySSF466891.97E-17195254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-28195255IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-22197250IPR006447Myb domain, plants
PfamPF002493.7E-7199249IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MMENNGFSSP RTDAFPAGLR VLVVDDDPTW LKILEKMLRK CSYEVTTCGL ARDALNKLRE  60
RKDGYDIVIS DVNMPDMDGF KLLEHVGLEM DLPVIMMSVD GETSRVMKGV QHGACDYLLK  120
PIRMKELRNI WQHVLRKRIH EVRDIESFDN GGIESSTIQM SDDAHLFFCG GDDFSSMKRR  180
KDHYDDNNDT SSSSTKKARV VWSVDLHQKF VKAVNQIGYD KVGPKKILDL MNVPWLTREN  240
VASHLQKYRL YLSRLQKDSS DQKTSIGSAK YSDSPSSDAV LFNVNYGIPS SALVDRKTVS  300
SATAGQKRAL TVDIPDTHIP TKAARTDLGQ TFGSSQAPYM WGNDNNNNNT DIQLKQEQKP  360
LHLDNVFRKP QPTEVDEIPA TTSSGTQHQC VTVETSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-17193255163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011389
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002515016.21e-165two-component response regulator ARR11
SwissprotQ9FXD61e-130ARR11_ARATH; Two-component response regulator ARR11
TrEMBLA0A061E8U61e-164A0A061E8U6_THECC; Two-component response regulator
TrEMBLB9RMP71e-163B9RMP7_RICCO; Two-component response regulator
STRINGLus100113890.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-128response regulator 11
Publications ? help Back to Top
  1. Zwack PJ, et al.
    Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.
    Plant Physiol., 2016. 172(2): p. 1249-1258
    [PMID:27550996]
  2. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]