PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010974
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 196aa    MW: 22264.3 Da    PI: 8.2802
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010974genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT eEd++l++ ++ +G+ +W+  ++  g+ R++k+c++rw +yl
      Lus10010974 14 KGTWTYEEDQKLINFIRTYGTCCWRDLPQLAGLSRCGKSCRLRWTNYL 61
                     799*******************************************97 PP
2Myb_DNA-binding46.77.3e-1572110646
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      + E+ + +++++qlG++ W++Ia+ ++ gRt++++k++w++
      Lus10010974  72 EYEENIVINLHAQLGNK-WSKIAAQLP-GRTDNEIKNHWNS 110
                      5699*************.*********.***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-22563IPR009057Homeodomain-like
PROSITE profilePS5129415.514961IPR017930Myb domain
SuperFamilySSF466895.62E-2811108IPR009057Homeodomain-like
SMARTSM007175.5E-121363IPR001005SANT/Myb domain
PfamPF002491.1E-141461IPR001005SANT/Myb domain
CDDcd001676.94E-91661No hitNo description
PROSITE profilePS5129424.11462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-2364116IPR009057Homeodomain-like
SMARTSM007174.5E-1166114IPR001005SANT/Myb domain
PfamPF002498.1E-1371110IPR001005SANT/Myb domain
CDDcd001674.33E-974109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGRKPCCEKA GLKKGTWTYE EDQKLINFIR TYGTCCWRDL PQLAGLSRCG KSCRLRWTNY  60
LRPDLKRELL SEYEENIVIN LHAQLGNKWS KIAAQLPGRT DNEIKNHWNS RIKKKLHLLG  120
TEPISCHKPD IQLSTSISSS LTNQPINNAS SESKEAKPSS SMDDDLQSAI TQLAEHLDVP  180
DYRDVTDLSL FKDFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10010974
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032717.19e-72PREDICTED: protein ODORANT1
SwissprotQ9C7U73e-68MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A059ADJ02e-70A0A059ADJ0_EUCGR; Uncharacterized protein
STRINGLus100109741e-143(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.18e-70myb domain protein 43
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]