PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008643
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 485aa    MW: 54728.7 Da    PI: 6.6782
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008643genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.63.4e-23115222186
     trihelix   1 rWtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsess 76 
                  +Wt+ +v++Li a+ +++++++++                      +kk++W++vs++m e+g+ +sp+qC++k+++lnkryk+++++ +++ +++++
  Lus10008643 115 KWTDGMVRLLIMAVYYIGDEVGTEGsdpvvsnsgsgkkkqsgaglsQKKGKWKSVSRAMLEKGYYVSPQQCEDKFNDLNKRYKRVNDILGRGtACKVV 212
                  7**************9999999754466777778888888888998**********************************************559*** PP

     trihelix  77 stcpyfdqle 86 
                  ++ +++d ++
  Lus10008643 213 ENQALLDTMD 222
                  ***9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.5E-21113247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MEQNGLFSGS GITSSSAAML GLDISLHQQQ IPQNNPPPQQ QQHNFHHHNP PMAAPAAAAA  60
AYAPPQLQPA VKLQNQYPPF AASSHPKSPL SDDDDCVGDD GGDPKKKMSP WHRMKWTDGM  120
VRLLIMAVYY IGDEVGTEGS DPVVSNSGSG KKKQSGAGLS QKKGKWKSVS RAMLEKGYYV  180
SPQQCEDKFN DLNKRYKRVN DILGRGTACK VVENQALLDT MDLSPKMKEE VRKLLSSKHL  240
FFREMCAYHN SCGHGPASGD ATHQQHQHHP QQGSSQVLQQ HKCSHTENSG HMVANSMAGK  300
RVTNEEDDDD DEDESHDDEY DDDEDYEDGA EGHSRGQNSN ASHGHEEDGH DTHKRPRRTV  360
ADMMMSSTMQ EFNGELMGVV QDGAKSPWEK KQWMRMRLMQ LEEQQVSYQA KSLEIEKQRM  420
KWVKFAGKKE REMERAKLEN ERKRIENERM MLFVRQKELD LQHQQQQQQQ HCSNRRSDPS  480
SLTG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10008643
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619818.11e-175nucleolar transcription factor 1-B-like
TrEMBLA0A2C9VCP21e-173A0A2C9VCP2_MANES; Uncharacterized protein
STRINGLus100086430.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.13e-70sequence-specific DNA binding transcription factors