PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007719
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family AP2
Protein Properties Length: 576aa    MW: 63108.7 Da    PI: 8.1932
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007719genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.36.9e-12215271155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +++Aa+a++ a++k++g
  Lus10007719 215 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEDKAARAYDLAALKYWG 271
                  78*******************77776664346655.77***99*************98 PP
2AP243.38.8e-14316365355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+ ++ a+ k++g
  Lus10007719 316 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFTTQEEAAESYDVAAIKFRG 365
                  9***************988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-14215281IPR016177DNA-binding domain
PfamPF008473.0E-9215271IPR001471AP2/ERF domain
CDDcd000183.41E-18215279No hitNo description
Gene3DG3DSA:3.30.730.106.0E-12216280IPR001471AP2/ERF domain
PROSITE profilePS5103217.056216279IPR001471AP2/ERF domain
SMARTSM003801.0E-21216285IPR001471AP2/ERF domain
PRINTSPR003676.7E-6217228IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-17314374IPR016177DNA-binding domain
CDDcd000185.34E-24314375No hitNo description
Gene3DG3DSA:3.30.730.105.7E-18315373IPR001471AP2/ERF domain
PROSITE profilePS5103218.913315373IPR001471AP2/ERF domain
SMARTSM003801.3E-31315379IPR001471AP2/ERF domain
PfamPF008478.2E-9316365IPR001471AP2/ERF domain
PRINTSPR003676.7E-6355375IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MKMDLPSDHP LYITGQQQGP FLHHLNHSPL TVMPLKSDGS LCIHPPTSTT TSSSSSSPKL  60
EDFLGAGAGR PDHHHNIPSL TLDSYYNINN QEDTNSPFHF HTHNLSSSSS YYPAAFHWIT  120
PSCFPNFDNH NNHLQDLQAA CCVGGDLQSL TLSMSPGSQS SSVTATASNN NNSTTTTTQQ  180
QCVTTESKKR ALPEKPAQKQ TVHRKSIDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK  240
EGQTRKGRQG GYDMEDKAAR AYDLAALKYW GPSTHINFPL ENYHKELEEM KNMSRQEYVA  300
HLRRKSSGFS RGASMYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFTTQE EAAESYDVAA  360
IKFRGANAVT NFDITRYDVE KIMASNTLLA GDLARRKTKE LDTTSSMDIP QAAAVGYLTT  420
TSDNNSTSPH NNNGNVTSLL EWNAMLYGSN NNHHEAGLES GGNGFMRVSS SSPFHDLIAM  480
ESSLSNGLVD MTAKLGGTHS TSSNPSSLVT SLSSSREGSP EKVVNTSTTA AAATMLFGNK  540
PPLASSKYVS PVTSSSTIPP WFQANLPMFA SWNDA*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007719
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021284854.10.0AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-144CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2I0KVU30.0A0A2I0KVU3_PUNGR; Uncharacterized protein
STRINGLus100077190.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-133AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]