PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005997
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 267aa    MW: 30037.1 Da    PI: 5.4827
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005997genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox375.8e-12841083256
                  HHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  32 eLAkklgLterqVkvWFqNrRakek 56 
                  eLA+ lgL+ rqV +WFqN+Ra++k
  Lus10005997  84 ELARDLGLQPRQVAIWFQNKRARWK 108
                  8***********************9 PP
2HD-ZIP_I/II86.82.9e-28791462693
  HD-ZIP_I/II  26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                    r  elar+Lglqprqva+WFqn+RAR+k+kqlE+dy  L+++y++l+++ e+L+ke+++L+++l++
  Lus10005997  79 LGRSLELARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILRANYNSLASRFESLKKEKQALAAQLQK 146
                  567899***********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.7E-462114IPR001356Homeobox domain
SuperFamilySSF466898.55E-1180122IPR009057Homeodomain-like
PRINTSPR000313.9E-58190IPR000047Helix-turn-helix motif
Gene3DG3DSA:1.10.10.608.6E-1283116IPR009057Homeodomain-like
CDDcd000864.16E-884111No hitNo description
PROSITE profilePS5007112.08284110IPR001356Homeobox domain
PfamPF000462.2E-984108IPR001356Homeobox domain
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000313.9E-590106IPR000047Helix-turn-helix motif
PfamPF021833.9E-18110150IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MESDGITDVA YDNKNKNITA VLQIHRTSTN HQAPPPPPHP PPPTKLERSR TKTTTITASG  60
GSPTSRSSQR CRRETRRDLG RSLELARDLG LQPRQVAIWF QNKRARWKSK QLERDYGILR  120
ANYNSLASRF ESLKKEKQAL AAQLQKLNES MMENPRTEQA DHAAATYNSS EGESDNSVKD  180
EKISLEPKAK SEQVRVGFMS EDENDSSVKV EYFGAEEEAE EAKLMSMVGG GDGSLTSQED  240
WGSLDSDGVL FHDQPNTDYQ WWEFWT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005997
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8297902e-44EU829790.1 Linum usitatissimum clone LU0012B03 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529960.24e-69LOW QUALITY PROTEIN: homeobox-leucine zipper protein ATHB-7
TrEMBLB9I9242e-64B9I924_POPTR; Uncharacterized protein
STRINGLus100059970.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-47homeobox 7