PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005513
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family AP2
Protein Properties Length: 354aa    MW: 39538.1 Da    PI: 6.0673
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005513genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.71.2e-1252108155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  Lus10005513  52 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 108
                  57*******************99998898888888********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.92E-1552117IPR016177DNA-binding domain
PfamPF008471.0E-852108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-1353117IPR001471AP2/ERF domain
SMARTSM003803.9E-2053122IPR001471AP2/ERF domain
PROSITE profilePS5103218.66353116IPR001471AP2/ERF domain
PRINTSPR003674.0E-65465IPR001471AP2/ERF domain
SMARTSM003800.013134203IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-5171199IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-6171198IPR001471AP2/ERF domain
PRINTSPR003674.0E-6179199IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MAKLSQQKGS ISSNGQQLGV NKSIPSSSAN GVTKVKRTRR TVPRDSPPQR SSIYRGVTRH  60
RWTGRYEAHL WDKNCWNESQ NKKGRQGAYD DEEAAAHAYD LAALKYWGPE TILNFPLATY  120
DKELKEMEGQ SREEYIGSLR RGTKANSELH CFPGKAVGFL VVFPSTEGLP ATQEEAATAY  180
DMAAIEYRGL NAVTNFDLSR YIKWLKPKQN VPNQLATENP NPIPTLGANP SHELGFNFFQ  240
TQPPQDQQQT FQPIEPTPST TVVQPRSSIN TKSALGLLLQ SSKFKEMMEM TSVVDRPLTP  300
TNLDLEPSQC SFPEDIQTYF GSQDSSNYEE NSDMIFGDIN SFVPPMFNCD FNA*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005513
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018218.11e-139PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN47e-71AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLB9IM931e-136B9IM93_POPTR; Uncharacterized protein
STRINGLus100055130.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-62ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]