PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10005284 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | LBD | ||||||||
Protein Properties | Length: 234aa MW: 25929.9 Da PI: 6.7104 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 111.2 | 7.5e-35 | 18 | 118 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +CaaCk++rr+Ca+dC+l pyfp +++k+f ++h +FG++n++++l++++ + r++a++slv+eA+a+a+dPv+G +g+++klqq+ ++l+++l+l+ Lus10005284 18 KCAACKYQRRRCAEDCALYPYFPTDRTKEFTAAHAVFGVKNMTSMLTEINLHVdRKKAVDSLVWEANAWAEDPVNGPLGLYKKLQQEKKELESQLQLA 115 5************************************************88877*******************************************9 PP DUF260 98 kee 100 k++ Lus10005284 116 KHQ 118 997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.81 | 17 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-33 | 18 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MDGATSSDKS GANSSRHKCA ACKYQRRRCA EDCALYPYFP TDRTKEFTAA HAVFGVKNMT 60 SMLTEINLHV DRKKAVDSLV WEANAWAEDP VNGPLGLYKK LQQEKKELES QLQLAKHQTT 120 RMSSFGDYGG DDVGSCAMMM MNPSGLGFQS SLMAESGGNN SYDFQYYQQR LGHQLIPSYH 180 HYGNGLQIHQ QQVLPMSIPR YNPSLEGQVN MYKDDAIDVS TMEGSTSTGN QGQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-22 | 19 | 130 | 12 | 121 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-22 | 19 | 130 | 12 | 121 | LOB family transfactor Ramosa2.1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10005284 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10005284 | 1e-177 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1334 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 9e-25 | LOB domain-containing protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Lus10005284 |