PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10004876

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bZIP

Protein Properties

Length: 534aa MW: 58965.9 Da PI: 7.3852

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10004876	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.7	6.9e-10	229	259	4	34
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 k rr+++NReAAr+sR+RKka++++Le Lus10004876 229 AKTLRRLAQNREAARKSRLRKKAYVQQLESS 259 6889************************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.0E-7	225	273	No hit	No description
SMART	SM00338	3.7E-7	226	303	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.278	228	272	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.8E-7	229	263	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.45E-24	230	282	No hit	No description
SuperFamily	SSF57959	2.19E-6	230	272	No hit	No description
PROSITE pattern	PS00036	0	233	248	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.4E-31	311	386	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence Send to blast
MGSSHRMGET GLSDSGPSTT HHHLPYALLH GMNPPSNSTA FMHQDGPAFD FGELEEAIVL 60 QGVKIRNEPA RSQVEVGSSS SGLFGEGVGR PAATTLEMFP SWPMRFHPHQ QHQQQHQHQQ 120 HTPIGSSRSG GESTDSGSGV NTTISEAHHN QHQHLHQPES PMSTKKAASS SSDHFHHFQQ 180 MDMVAAASNG VGVGPSSSSQ QQNQNQSSDH KPSTTDKRKG TSSEKPLDAK TLRRLAQNRE 240 AARKSRLRKK AYVQQLESSR IKLAQMEQEL QRARQQGLFM GGCGGAGANL SSAAAMFDME 300 YARWLEDDLR HMSELRTGLN AHLSDGDLRV VVDRYISHYD EIFRLKGLTA KSDVFHLITG 360 MWTTPAERCF LWMGGFRPSE LIKMLISQLD PLTEQQVMGI YSLQHSSQQA EDAMSQGLEQ 420 LQQSLVDTIA GGPVVDGMQQ MAVALGKLAN LEGFVRQADN LRQQTLHQLR RILTVRQAAR 480 CFLVIGEYYG RLRALSSLWA SRPRDAMLGD ENSCQTTTDL QMVQSSHSHF ANF*

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence Send to blast

MGSSHRMGET GLSDSGPSTT HHHLPYALLH GMNPPSNSTA FMHQDGPAFD FGELEEAIVL  60
QGVKIRNEPA RSQVEVGSSS SGLFGEGVGR PAATTLEMFP SWPMRFHPHQ QHQQQHQHQQ  120
HTPIGSSRSG GESTDSGSGV NTTISEAHHN QHQHLHQPES PMSTKKAASS SSDHFHHFQQ  180
MDMVAAASNG VGVGPSSSSQ QQNQNQSSDH KPSTTDKRKG TSSEKPLDAK TLRRLAQNRE  240
AARKSRLRKK AYVQQLESSR IKLAQMEQEL QRARQQGLFM GGCGGAGANL SSAAAMFDME  300
YARWLEDDLR HMSELRTGLN AHLSDGDLRV VVDRYISHYD EIFRLKGLTA KSDVFHLITG  360
MWTTPAERCF LWMGGFRPSE LIKMLISQLD PLTEQQVMGI YSLQHSSQQA EDAMSQGLEQ  420
LQQSLVDTIA GGPVVDGMQQ MAVALGKLAN LEGFVRQADN LRQQTLHQLR RILTVRQAAR  480
CFLVIGEYYG RLRALSSLWA SRPRDAMLGD ENSCQTTTDL QMVQSSHSHF ANF*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10004876

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012077858.1	0.0	transcription factor TGA9 isoform X2
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A067KMV4	0.0	A0A067KMV4_JATCU; Uncharacterized protein
STRING	Lus10004876	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4555	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Link Out ? help Back to Top
Phytozome	Lus10004876

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]