PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003707
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 374aa    MW: 42416.5 Da    PI: 4.7272
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003707genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.46.4e-35161072102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Flkk y++++de++++lisws n +sf+++d++ef+ ++Lp yFkhsn aSFvRQLn+YgF+kv+ ++         weF+++ F +gkk+ll++i 
   Lus10003707  16 FLKKCYDMVDDESTNSLISWSPNCDSFIIWDMTEFSVNLLPAYFKHSNGASFVRQLNIYGFRKVDPDR---------WEFANDGFIRGKKHLLKNIS 103
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
   Lus10003707 104 RRKN 107
                   **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-5112105IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.3E-3212105IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.8E-3513105IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.5E-171639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.2E-3016105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-175466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-176779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MVKSGDDGTS LSITPFLKKC YDMVDDESTN SLISWSPNCD SFIIWDMTEF SVNLLPAYFK  60
HSNGASFVRQ LNIYGFRKVD PDRWEFANDG FIRGKKHLLK NISRRKNPQG SGNRRATTQE  120
KEKPVEPSEE VEKVDLWKDI ENLKIDKNAV TQELVKLRKH QETSDEKLLL LRDRLKGMET  180
NQQQMLSFLV MVMQHPGFVV QLLHPKENSW RMAEPGVITE QVDEPSISDG RIVRYQPQKD  240
HKVGEPVHQP QKDDSNSSWD WMKDFSISSD FMKLLSEQNL STGSNSPFVI PELQDDSSWE  300
QILRGASSLA DDRDANADGE EEEHGDAQVE TGRSLLSTLV STDLLEEQMR EFTALVGVPS  360
LCSASKTETK DGM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-23210516129Heat shock factor protein 1
5d5v_B2e-23210516129Heat shock factor protein 1
5d5v_D2e-23210516129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003707
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311537.11e-138heat stress transcription factor A-8 isoform X1
RefseqXP_024463668.11e-138heat stress transcription factor A-8 isoform X1
RefseqXP_024463669.11e-138heat stress transcription factor A-8 isoform X1
SwissprotQ9S7U52e-91HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLB9HJI41e-137B9HJI4_POPTR; Uncharacterized protein
STRINGLus100037070.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104192937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.13e-85heat shock transcription factor A8