PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10001898 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 324aa MW: 35538.8 Da PI: 9.2196 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61 | 2.8e-19 | 133 | 183 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p + r r++lg+++t+e Aa a+++a+ kl+ge Lus10001898 133 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTPEAAAYAYDRAAYKLRGE 183 59******9.**********954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.46E-22 | 132 | 192 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.6E-31 | 133 | 191 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-22 | 133 | 190 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.9E-37 | 133 | 196 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.156 | 133 | 190 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-12 | 134 | 145 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-13 | 134 | 183 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-12 | 172 | 192 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 324 aa Download sequence Send to blast |
MEALCGSNNN NNNNPSDIDI GTSLSQLILM GGAGSNTLDS IFSFCHHYPQ LSSSSSSSSS 60 AMEPLGSSVY LRQRELLEKF SNENQTTTSS TISFPTSSYS LLESSLQRRT TSSNHYGKGP 120 LFPPPSSKAT TKLYRGVRQR HWGKWVAEIR LPQNRMRVWL GTYDTPEAAA YAYDRAAYKL 180 RGEYARLNFP NLEENSKLGV LDSAKLNSVR TSVDAKIQSI CQKLKRERAK KIAAKRLNDS 240 KTANNSGRSA VETLPAKIEV NSSSPSLSPS TSTSTSCGNS PQSVETEYMV MVPTKEMEMD 300 GGFSLARMPS YDPELIWEVL LAN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-20 | 132 | 190 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10001898 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002509951.1 | 2e-87 | ethylene-responsive transcription factor ERF061 | ||||
Swissprot | Q9C7W2 | 1e-64 | ERF61_ARATH; Ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | B9RCR7 | 4e-86 | B9RCR7_RICCO; DNA binding protein, putative | ||||
STRING | Lus10001898 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7181 | 31 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G64380.1 | 1e-53 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10001898 |
Publications ? help Back to Top | |||
---|---|---|---|
|