PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10001553
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family AP2
Protein Properties Length: 374aa    MW: 42082.7 Da    PI: 8.8908
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10001553genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.61.3e-1260116155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  Lus10001553  60 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 116
                  57*******************99998898888888********************98 PP
2AP251.13.2e-16159210155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Lus10001553 159 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 210
                  89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-860116IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-1560125IPR016177DNA-binding domain
SMARTSM003803.9E-2061130IPR001471AP2/ERF domain
PROSITE profilePS5103218.66361124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-1361125IPR001471AP2/ERF domain
PRINTSPR003674.4E-66273IPR001471AP2/ERF domain
PfamPF008476.0E-12159210IPR001471AP2/ERF domain
CDDcd000185.55E-24159220No hitNo description
SuperFamilySSF541711.11E-17159220IPR016177DNA-binding domain
SMARTSM003801.2E-24160224IPR001471AP2/ERF domain
PROSITE profilePS5103218.334160218IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17160219IPR001471AP2/ERF domain
PRINTSPR003674.4E-6200220IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MAKLSQPKHN SNGSSSSNSI SHGQQLGVNK SIPSSSSNGV TKVKRTRRTV PRDSPPQRSS  60
IYRGVTRHRW TGRYEAHLWD KNCWNESQNK KGRQGAYDDE EAAAHAYDLA ALKYWGPETI  120
LNFPLATYDK ELKEMEGQSR EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV  180
FGNKYLYLGT YATQEEAATA YDMAAIEYRG LNAVTNFDLS RYIKWLKPKQ NAPELATENP  240
NPIATLAANP SRELGFNFFQ TQPPQDQQQT YQSIEPTPST TVVQPRSSTN TKSALGLLLQ  300
SSKFKEMMEM TSVVDRPLTP TNLDLEPPQC SFPEDIQTYF GSQDSSNYEE SSDMIFGDIN  360
SFVPPMFNCD FNA*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10001553
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018218.11e-180PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-111AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLB9IM931e-177B9IM93_POPTR; Uncharacterized protein
STRINGLus100015530.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-96ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]