PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000974
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family M-type_MADS
Protein Properties Length: 174aa    MW: 20083.9 Da    PI: 7.5772
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000974genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.85.2e-121050242
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 +i  +  r++tf kR++g+  K  E+S+LC++ ++ +ifs+
  Lus10000974 10 FIAKEAARKTTFKKRKTGLWNKLREISTLCGVAACGVIFSN 50
                 7888999********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.152150IPR002100Transcription factor, MADS-box
SMARTSM004324.0E-10161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-172101IPR002100Transcription factor, MADS-box
PfamPF003191.3E-131050IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MGRRKVRHEF IAKEAARKTT FKKRKTGLWN KLREISTLCG VAACGVIFSN FAGKGKENQP  60
KVEAWPSGPE AVDMLKKVKD LPEKRQKKYK LNHESLLNAR VEKLEEKLKN EIENNQWLEI  120
EWLLEHGDDE HVEGALSGGY RDANDLEKLR SMSEKVEELI RQVDERIEDL ENE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVRHEFIAKEAARKTTFKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000974
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8848896e-43HQ884889.1 Linum usitatissimum clone Contig716 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100009741e-122(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144641115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.24e-15AGAMOUS-like 87