PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000332
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 351aa    MW: 38925.1 Da    PI: 6.7237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000332genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-13152203155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i   A++++k+L+
  Lus10000332 152 QRMTHIAVERNRRKQMNEYLSVLRSLMPSS---YAQRGDQASIIGGAINFVKELE 203
                  79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.89E-14150207No hitNo description
Gene3DG3DSA:4.10.280.101.8E-14150207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-16151214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.777151202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-11152203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-10157208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MAIEALDFAF QQQDYSFFTQ FTNKNQSADS FLWSAADFNN NHSGGCDEDF FLPPASGDDY  60
NVGGNQYNWD NYFLPISSSS TSSPTAALID GIYTGGSDNV TINGDSLSSS SPAAHAATTA  120
EANGRGGSPL RPPRVKRRRA RSCKNKEEIE SQRMTHIAVE RNRRKQMNEY LSVLRSLMPS  180
SYAQRGDQAS IIGGAINFVK ELEQKLQQFG SYAKRKSTIN QNNRSLPFSE FFTFPQYSSS  240
SSQSPKNPET ENHETGPKHG VVGDVEVTMV ESHANVRIRW KKQPKQLLRL VAGLQSLRLT  300
VLHLNVTTDQ DQQIVLYSLS LKVEDDCRLS SVDEIATAVY EMLGRISHEA *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152163RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000332
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023898498.18e-99transcription factor bHLH94-like
SwissprotQ9C7T49e-69BH096_ARATH; Transcription factor bHLH96
SwissprotQ9SK915e-69BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A2I4HRB11e-96A0A2I4HRB1_JUGRE; transcription factor bHLH94-like
STRINGLus100003320.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.17e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]