PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v2030840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 258aa MW: 29883.2 Da PI: 9.0103 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.9 | 1.1e-10 | 74 | 126 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ h e+E++RR+++ + + Lr+llP + ++K s ++ ++v+YI++Lq Lj5g3v2030840.1 74 KKMVHREIEKQRRQEMATLHASLRSLLPLHF--IKGKRSLSDQMNEVVNYINHLQ 126 6889*************************65..*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.9E-12 | 72 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.56E-8 | 72 | 130 | No hit | No description |
PROSITE profile | PS50888 | 12.646 | 73 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-7 | 74 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.3E-9 | 74 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MFPLQRSNKL ATPFSNSVRH RQHKISEDQI LDDCDSLVVD FSDKKLSSGR TKRILYHSTA 60 GTTHANNSEE FKKKKMVHRE IEKQRRQEMA TLHASLRSLL PLHFIKGKRS LSDQMNEVVN 120 YINHLQKNIK ELSDKRDELN NLSNILKKDH ASASFTFHQS DGCVGIEITS GFREEEGLPV 180 SKLLEILLEE GLEVVSCIST KVNGKLLHSM QCEVWRSREC YHFVFLFYKS YSNIFMFILL 240 TELRRKISNV IQSFSCSD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.17859 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v2030840.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT147055 | 0.0 | BT147055.1 Lotus japonicus clone JCVI-FLLj-11B3 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003592388.2 | 5e-95 | transcription factor bHLH118 isoform X2 | ||||
Swissprot | Q9FLI1 | 8e-34 | BH036_ARATH; Transcription factor bHLH36 | ||||
TrEMBL | G7ID49 | 1e-93 | G7ID49_MEDTR; Putative transcription factor bHLH family | ||||
STRING | XP_004496640.1 | 4e-91 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 1e-31 | bHLH family protein |