PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2030790.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 243aa    MW: 27755.6 Da    PI: 8.2439
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2030790.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.4e-0961110455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h e E++RR++i +  ++ r++lP       ++K   ++   + ++YIk+Lq
  Lj5g3v2030790.2  61 MHRESEKQRRQEISKLCATFRSHLPLaY---IKGKRATSDHIHEGTNYIKHLQ 110
                      79************************55...99*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.68757109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-858114No hitNo description
SuperFamilySSF474595.23E-1258126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-859125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-661110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MNPFHSIDEL YFSSANYSLP IQTTTPLTLD QISPDPVMDI SDLPCAKDHK SSNIHEIKKW  60
MHRESEKQRR QEISKLCATF RSHLPLAYIK GKRATSDHIH EGTNYIKHLQ NNVKKLQDKR  120
DELMKLSNFN HVGSESANFA TYVIVHPCLG GIQIKCSYSF KKHAFPLSRV LDIVLKEGLN  180
VINCISTRTD DHRFIHTIQS EGPHFLMNET NYTELQSKLI AAISSSTIVG QEEFDGRGVS  240
YIR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v2030790.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536494.23e-91transcription factor bHLH36
RefseqXP_028184038.13e-91transcription factor bHLH36-like
TrEMBLA0A445IS076e-90A0A445IS07_GLYSO; Transcription factor bHLH36
TrEMBLK7LL606e-90K7LL60_SOYBN; Uncharacterized protein
STRINGGLYMA10G38620.21e-90(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.15e-37bHLH family protein