PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1788210.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 274aa    MW: 30345.2 Da    PI: 7.347
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1788210.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.41.5e-1498144354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Lj5g3v1788210.1  98 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 144
                      79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.90795144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-1298144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-1599153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-1599151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.57E-5108147No hitNo description
CDDcd048731.17E-5182255No hitNo description
Gene3DG3DSA:3.30.70.2604.6E-4182231No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSQQNSDIFG FNHHHMFPGG EVPWSMPQVQ PFNQASPYAS FFNRSRVVPS SLQFTYNDHH  60
HHQVQPGSSS SAPFGLQAEM GKMSAQEIME AKALAASKSH SEAERRRRER INNHLAKLRS  120
LLPSTTKTDK ASLLAEVIQH VKELKRQTSL IAETSPVPTE ADEITVDAAD DEDNGKFVIK  180
ASLCCEDRTD ILPELIKTLK ALRLRTLKAD ITTLGGRMKN VLFITGDDNN EDSYSSRSCI  240
ISSIQEALKA VIEKSVGDES AASGNVKRQR TNIV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103108ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1788210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027361998.11e-122transcription factor bHLH30-like
SwissprotQ9S7Y16e-99BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A1J7FMQ61e-118A0A1J7FMQ6_LUPAN; Uncharacterized protein
STRINGGLYMA01G22530.41e-115(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-79bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]