PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1698900.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 373aa    MW: 41844.3 Da    PI: 8.3648
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1698900.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.0009150172123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+++F++   L  H  +H
  Lj5g3v1698900.1 150 YECKTCNRTFPSFQALGGHRASH 172
                      99**********99999998887 PP
2zf-C2H212.90.00032231253123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  F++   L  H+r+H
  Lj5g3v1698900.1 231 HECSICGAEFTSGQALGGHMRRH 253
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.07E-9149172No hitNo description
PfamPF139123.5E-13149174IPR007087Zinc finger, C2H2
SMARTSM003550.052150172IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.637150177IPR007087Zinc finger, C2H2
PROSITE patternPS000280152172IPR007087Zinc finger, C2H2
SuperFamilySSF576679.07E-9226253No hitNo description
Gene3DG3DSA:3.30.160.603.0E-4229255IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.4E-13230255IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.429231258IPR007087Zinc finger, C2H2
SMARTSM003550.01231253IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280233253IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEAPEELSLG SKEHTNIVKG KRTKRVRPQS PIPFSITANS STGEEGEKED CYNGVDDNNN  60
NNSNKDDDAN TNTNNINTSS PTTSYAGLSS QEEEEDMANC LILLAQGQAK ESPKHTPPEE  120
DVGMNYTKYS SRKFMEAAAL DSGKAGFYVY ECKTCNRTFP SFQALGGHRA SHKKPKAMAA  180
AAMALGNQEK KQLFLSSDEE EFQFKANKSL SLQLNSRGNL YSNNNNKSKV HECSICGAEF  240
TSGQALGGHM RRHRGPVGTN TTLSLTPMVL EPEQDQPRKK RNVLNLDLDL NLPAPEDDQR  300
ESKFAFGSKQ QQQQHGQKQQ QQHQQQHQQH QQQHQQQAGR QYSSLFARIF SARRYFFLLA  360
SSILVITWLN LRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1698900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0105240.0AP010524.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT34P16, TM1824, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027364640.11e-159zinc finger protein ZAT5
TrEMBLA0A1S3V2A61e-148A0A1S3V2A6_VIGRR; zinc finger protein ZAT9
STRINGXP_007144239.11e-146(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.13e-63C2H2 family protein