PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v1533330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 724aa MW: 77648.5 Da PI: 6.5874 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.7 | 3.3e-16 | 465 | 511 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq Lj5g3v1533330.1 465 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 511 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.55E-17 | 457 | 515 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.0E-20 | 458 | 519 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.2E-21 | 458 | 523 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.349 | 461 | 510 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-13 | 465 | 511 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.6E-18 | 467 | 516 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 724 aa Download sequence Send to blast |
MPLYELFRLA RDKLDKEINN TRVAEQPSSP EDDFFELVWE GGQISSQGQS SRSRRSPSSR 60 SLPSHCIPSH SPKGREKDAG IGYGNNTKMG KFGDLDPELN EIPMSVSSRE VGLNQDEELM 120 PWLDYSMDGS LQHEYGSDFL HELSGVTEHD LTASNNYTLL DKRSTGNQVF REPYKNAAES 180 GNVSKGSSAE QVENARPKAN TTQLYPPSLV ASRASEITEN NNTSNMSQNV PYGEIAQIPS 240 SSSDFSSLKV QRQDHVMPPN NGSAVMNFSH FARPAAIVRA NLQNISLKSG SSSARSDSVG 300 VKNKGAASTS FNPPESTLVD SNGECPKELT MHSQKVVAQS KADLKPLLPK SLEQNAVVSK 360 QTEPACKESA VKTDQTSKQV IAENGAKGPT AAERSAEPAV ASSSVCSGNG IDRCSNDPNQ 420 NLKRKSRDTE DSEYHSEDAE EESVGVKKAS AGRGTGSKRS RAAEVHNLSE RRRRDRINEK 480 MRALQELIPN CNKVDKASML DEAIEYLKTL QLQVQMMSMG AGFYMHPMML PGGMQHMHTP 540 HMAPFSPMGV GMHMGLGMGF GMGMPDMNGG SSRFPMIQVP QMHGTHVPVA HMSGPTALHG 600 MARSNSPGFG LPGQGLPMQM PHAPGFPFQG GPLMNSSAPV LHACGPAGLV GTGDSASASG 660 LKDPMPNVDS QVKQSTGSRD TTSQMPPQCE TATVGFEQSA LVHNSGQASL ANDSGAVNGK 720 QGYD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 469 | 474 | ERRRRD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.917 | 2e-96 | floral bud| flower| pod |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00081 | ChIP-seq | Transfer from AT1G09530 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v1533330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027363600.1 | 0.0 | transcription factor PIF3-like | ||||
TrEMBL | A0A0B2R1U0 | 0.0 | A0A0B2R1U0_GLYSO; Transcription factor PIF3 | ||||
STRING | GLYMA20G22291.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5271 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 1e-70 | phytochrome interacting factor 3 |