PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj5g3v1452280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 242aa MW: 27221 Da PI: 8.1006 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.4 | 5.3e-13 | 42 | 93 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++++L+ Lj5g3v1452280.1 42 QRMTHIAVERNRRKQMNEYLSVLRSLMPES---YIQRGDQASIIGGAINFVRELE 93 79****************************...9*****************9985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.3E-14 | 40 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.16E-13 | 40 | 97 | No hit | No description |
PROSITE profile | PS50888 | 15.421 | 41 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-16 | 41 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-10 | 42 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-9 | 47 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MLPHMNELQE TTDPSNTSNF ASARPKRRRA RSRKNKEEIE NQRMTHIAVE RNRRKQMNEY 60 LSVLRSLMPE SYIQRGDQAS IIGGAINFVR ELEQRLQFLG AKKESEGKSE NEAATASMPF 120 SEFFSFPQYS TSASGCDDSA AIGEHVGGVQ SGIADIEVTM VESHANLKIR SKKRPKQLLK 180 MVTGLHTMRL TILHMNVTTT GEIVLYCLSV KVEEDCKLGS VDDIAAAVYQ MLDRIHQEAM 240 LN |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 42 | 53 | RMTHIAVERNRR |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Lja.20484 | 3e-40 | root |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj5g3v1452280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP006127 | 0.0 | AP006127.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT48O21, TM0211, complete sequence. | |||
GenBank | FJ379769 | 0.0 | FJ379769.1 Lotus japonicus putative basic helix-loop-helix protein BHLH26 gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020207714.1 | 1e-150 | transcription factor bHLH94 | ||||
Swissprot | Q9C7T4 | 8e-80 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | C0JP34 | 1e-180 | C0JP34_LOTJA; Putative basic helix-loop-helix protein BHLH26 (Fragment) | ||||
STRING | GLYMA20G37550.1 | 1e-144 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF718 | 34 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72210.1 | 3e-81 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|