PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v1415190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | Trihelix | ||||||||
Protein Properties | Length: 595aa MW: 69025.4 Da PI: 5.9649 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 57 | 5.1e-18 | 105 | 181 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++evlaL+++r++me+++ + We+vs+k++e g++rs+++Ckek+e+ +++ +i+ ++k+ ++ ++++++++le Lj5g3v1415190.1 105 WTNDEVLALLRIRSSMESWFPEF-----TWEHVSRKLAEVGYKRSAEKCKEKFEEETRYFNNINYTNKS---TNINNYRFLTELE 181 ********************998.....9***************************************8...4677899999997 PP | |||||||
2 | trihelix | 96.1 | 3.2e-30 | 428 | 514 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremee.rlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+evlaLi++r ++ + ++g+ k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k++ +k++s +s+tcpyf+ql Lj5g3v1415190.1 428 RWPKDEVLALINLRCTSNNnEDKEGNNKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDNTSKKRSLDSRTCPYFHQLS 514 8*************86665055679************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 14 | 101 | 158 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.6E-11 | 103 | 182 | No hit | No description |
PROSITE profile | PS50090 | 6.586 | 104 | 156 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.31 | 425 | 488 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.8E-19 | 427 | 515 | No hit | No description |
CDD | cd12203 | 4.83E-24 | 427 | 493 | No hit | No description |
PROSITE profile | PS50090 | 6.748 | 428 | 486 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001158 | Molecular Function | enhancer sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 595 aa Download sequence Send to blast |
MFDGVPDQFH QFITPRTSLP LHLPFPLHAS SAPNNNTTFP SFDPYNPSHH QLPFQPNLLH 60 HPLHHKDEEK EENNNTVQPN PMNFQIERDQ RQQLPQLQQQ QVDPWTNDEV LALLRIRSSM 120 ESWFPEFTWE HVSRKLAEVG YKRSAEKCKE KFEEETRYFN NINYTNKSTN INNYRFLTEL 180 EELYEEVGTE KSTTHQQQQQ QQDKMEERAA LDDQDHHDDS VDQTKQNKAQ SEEDQEKIMK 240 ERKRKRVDDR FEVFKGFCES VVNNMMARQE EMHRKIIEDM VRRDEEKFSK EEAWKKQEMD 300 KMNKELEMMA HEQAIAGDRQ ANIIQFLKNF EKSQRFGSGN GKEKLKVTSE DSSTLLSQNP 360 SPSPSSTLPT SCALVVAENP SSINLGQDTS SRVVVPFENP SSSLNPQETN SVLIHKGSTI 420 EKDDVGRRWP KDEVLALINL RCTSNNNEDK EGNNKAPLWE RISQGMLELG YKRSAKRCKE 480 KWENINKYFR KTKDNTSKKR SLDSRTCPYF HQLSNLYNQG KLVPQSERPE GKLNNAAANN 540 NAPDQITPQA ESSSTQVGSG CGNFTVQQQQ QQKVDDHEGE KTSMQQVPSL DFDQF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.19878 | 0.0 | floral bud| flower| pod |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00011 | PBM | Transfer from AT5G28300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v1415190.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009768 | 0.0 | AP009768.1 Lotus japonicus genomic DNA, clone: LjT40E15, TM1928, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007144820.1 | 0.0 | hypothetical protein PHAVU_007G186700g | ||||
TrEMBL | V7BG15 | 0.0 | V7BG15_PHAVU; Uncharacterized protein | ||||
STRING | XP_007144820.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5043 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28300.1 | 4e-70 | Trihelix family protein |