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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Lj5g3v0712220.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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| Family |
Trihelix |
| Protein Properties |
Length: 454aa MW: 52700.3 Da PI: 6.9116 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lj5g3v0712220.1 | genome | Kazusa | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 92.2 | 5.2e-29 | 128 | 213 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r+ + +++++++qlea
Lj5g3v0712220.1 128 RWPRQETLTLLEVRSRLDPKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRH--DGKHYRFYRQLEA 213
8*************************************999*****************************985..5557******985 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 454 aa
Download sequence Send
to blast |
MEMEDHHHYH HQQQYDVATD LRNLVNLPIR PTHFPSVPPH PTAELFPGHR NLTPVPTPHH 60
HHQQQQQQQQ YEMMMLMPRG VHDFTPTITT TVAATATASA STPPPALSSS GFDAETAACF 120
GGDASTGRWP RQETLTLLEV RSRLDPKFKE ANQKGPLWDE VSRIMSEEHG YQRSGKKCRE 180
KFENLYKYYK KTKEGKAGRH DGKHYRFYRQ LEALYGENST NTAGSTLHFQ TNQEMFQTHQ 240
NNKHCDTSTS LTNSTEFDTS SCDDDDNDHS IEESECMRRK RRSRRSWKVK IKEFIDLQVK 300
KLVEKQEEWM DKIVKTMEEK EKERIIREEE WKKQEEKRLE REQRFWAKER AWIEARDAAL 360
MEALQNVTGS SFPYNNNNDH QSCLHNQGSN YCDINDQRKE NVGKAQTSDG SSPSNFNVGN 420
VAPNDSCNFP FLMSEGGNWW DSYGLKLSKA NQNQ
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: First observed in the early-developing flower, in four zones between the initiating sepals and in their developing margins. Later detected in the margins of expanding sepals, petals and stamens, and in the leaf margins. {ECO:0000269|PubMed:15269176}. |
| Uniprot | TISSUE SPECIFICITY: Confined to flowers, at low levels. Also present in 7-days-old seedlings. Barely detectable in other tissues such as young seedlings, roots, stems, leaves and siliques (PubMed:15269176). Expressed in flower primordia, more precisely between newly arisen sepal primordia and also at the basal margins of developing sepals (PubMed:25697797). {ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:25697797}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015041 | 1e-77 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
