PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v0704350.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Trihelix
Protein Properties Length: 468aa    MW: 53211.7 Da    PI: 5.6796
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v0704350.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.12.7e-24108207186
         trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 
                      +Wt+ +v++Li a+ +++++ +++              +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ +
  Lj5g3v0704350.1 108 KWTDTMVRLLIMAVYYIGDEAGSEGtdpngkkkqsgllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQS 201
                      7**************99988886433566778889999**********************************************559******* PP

         trihelix  81 yfdqle 86 
                      ++d ++
  Lj5g3v0704350.1 202 LLDTMD 207
                      **9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.2E-22106232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MEGNGLGSGM FSTSISSGLL GVENNNNPLQ QQNLTNQQNP HHLHHPQMVS YDQQQQLQQP  60
IKHGYSPYSS AKNKQQQSSI SDDDELGFPA DETSGDPKRK ISPWQRMKWT DTMVRLLIMA  120
VYYIGDEAGS EGTDPNGKKK QSGLLQKKGK WKSVSRAMME KGFYVSPQQC EDKFNDLNKR  180
YKRVNDILGK GTACRVVENQ SLLDTMDLSP KMKEEVRKLL NSKHLFFREM CAYHNSCGHG  240
ASPGETPQAQ AQAQPQQQQQ QENQQQQSCF HSSETASLGV SGAEGLRMMK LGSGEEDEDE  300
EEEEDSEESS DDDEDESAEG GSRGTLVDED ENDNGRSSRK RTRKSAGCSV SVSSTPSQLV  360
QQLNTEVSGV LQDGGKSPWE KRQWMRSRIM QLEEQQLSYQ TQAFDLEKQR VKWARFSSKK  420
EREMERAKLE NEKRRLENER MVLIIHQKEL ELMNLQHQQQ QQQQHSST
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.104080.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v0704350.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027367406.10.0putative uncharacterized protein DDB_G0287113
TrEMBLA7UQU90.0A7UQU9_MEDTR; Homeodomain-like
STRINGAES606480.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-71sequence-specific DNA binding transcription factors