PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

Lj5g3v0550200.2

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

WRKY

Protein Properties

Length: 311aa MW: 35000.1 Da PI: 8.0319

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj5g3v0550200.2	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	78.7	6.3e-25	134	191	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrK Gq++ kg+ +pr Y+ Ct+agCpv+k ver+ ++ k v++tY+g+Hnhe Lj5g3v0550200.2 134 DDGYRWRKSGQRPSKGNLMPRRYFMCTTAGCPVRKTVERNLHNLKNVITTYKGRHNHE 191 8********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.3E-26	121	193	IPR003657	WRKY domain
PROSITE profile	PS50811	29.103	128	193	IPR003657	WRKY domain
SuperFamily	SSF118290	7.85E-22	130	193	IPR003657	WRKY domain
SMART	SM00774	3.6E-22	133	192	IPR003657	WRKY domain
Pfam	PF03106	3.4E-19	134	191	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MLMGDNVVQI LLAPTERHAT KYSNDQYNDE KQVNLTIHEI KKGKMPMYCY KEAGAKVDEG 60 RPVTENLQLG GKSNKNKVTQ GSTSPSKEVD VAVVAHDSGS KRKSLDYYNK ALLRLIHPLP 120 KVEVQVESIV DVPDDGYRWR KSGQRPSKGN LMPRRYFMCT TAGCPVRKTV ERNLHNLKNV 180 ITTYKGRHNH EVPLEKHKDC SINVDDFHKA ANSLRTVAMS GNANIRGPEA NQEDENDFLR 240 LTLGQNFNND HVNVRSSSTN HIPGPEANQE DDNDFLRLTL GQNFNIDHVN VRSSSTNQIP 300 SINLEKDGDD I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-22	124	193	8	77	Probable WRKY transcription factor 4
2lex_A	1e-22	124	193	8	77	Probable WRKY transcription factor 4

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj5g3v0550200.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	7e-29	WRKY DNA-binding protein 33